Block Crossings in One-Sided Tanglegrams

IF 1 4区 计算机科学 Q4 COMPUTER SCIENCE, SOFTWARE ENGINEERING
Alexander Dobler, Martin Nöllenburg
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引用次数: 0

Abstract

Tanglegrams are drawings of two rooted binary phylogenetic trees and a matching between their leaf sets. The trees are drawn crossing-free on opposite sides with their leaf sets facing each other on two vertical lines. Instead of minimizing the number of pairwise edge crossings, we consider the problem of minimizing the number of block crossings, that is, two bundles of edges crossing each other locally. With one tree fixed, the leaves of the second tree can be permuted according to its tree structure. We give a complete picture of the algorithmic complexity of minimizing block crossings in one-sided tanglegrams by showing NP-completeness, 2.25-approximations, and a fixed-parameter algorithm with the parameter being the number of block crossings of the computed tanglegram. We also state results for non-binary trees.

单侧缠结图中的块交叉
缠结图是两个根的二元系统发育树和它们的叶集之间的匹配图。这些树被画在相对的两侧,它们的叶子在两条垂直线上相互面对。我们考虑的问题不是最小化成对边相交的数量,而是最小化块相交的数量,即两束边局部相交。一棵树固定后,第二棵树的叶子可以根据树的结构进行排列。我们通过展示np完备性、2.25近似和一个以计算的缠结图的块交叉数为参数的固定参数算法,给出了最小化单侧缠结图中块交叉的算法复杂性的完整图像。我们也给出了非二叉树的结果。
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来源期刊
Algorithmica
Algorithmica 工程技术-计算机:软件工程
CiteScore
2.80
自引率
9.10%
发文量
158
审稿时长
12 months
期刊介绍: Algorithmica is an international journal which publishes theoretical papers on algorithms that address problems arising in practical areas, and experimental papers of general appeal for practical importance or techniques. The development of algorithms is an integral part of computer science. The increasing complexity and scope of computer applications makes the design of efficient algorithms essential. Algorithmica covers algorithms in applied areas such as: VLSI, distributed computing, parallel processing, automated design, robotics, graphics, data base design, software tools, as well as algorithms in fundamental areas such as sorting, searching, data structures, computational geometry, and linear programming. In addition, the journal features two special sections: Application Experience, presenting findings obtained from applications of theoretical results to practical situations, and Problems, offering short papers presenting problems on selected topics of computer science.
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