Structural and electronic basis of stereoselectivity in isocycloseram: A DFT, spectroscopic, and docking study of its chiral isomers

IF 4.9 2区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Molecular Structure Pub Date : 2026-05-15 Epub Date: 2026-02-10 DOI:10.1016/j.molstruc.2026.145625
Zongxin Sun, Yujun Xie, Jian Chen, Shujie Zhang, Xichun Deng, Wenwen Zhou
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引用次数: 0

Abstract

Chiral compounds have different physical and chemical properties and biological activities because of the structural difference, so it is important to characterize the relationship between the structure and property of chiral compounds. For the first time, this study systematically investigates the four chiral isomers of the new insecticide isocycloseram (cis-(+)-(5R,4S) ISR, cis-(−)-(5S,4R) ISM, trans-(+)-(5R,4R) ISO, trans-(−)-(5S,4S) ISS) using DFT, experimental spectroscopy (ECD/UV), and molecular docking. The results of the structural optimization at B3LYP/6–311G(d,p) and MP2/aug-cc-pVTZ calculations show that ISS is the most thermodynamically stable isomer. From surface electrostatic potential (ESP) and frontier molecular orbital (FMO) analysis, The results indicate that ISO has the largest ESP and the smallest energy gap (4.533 eV). Molecular docking indicates that ISM exhibits the most favorable binding energies toward the 2CBZ and 8HNC receptors (−8.57 and −9.37 kcal·mol⁻¹, respectively) and forms multiple hydrogen bonds with favorable geometries. Noncovalent interactions (NCI) analysis through interaction region indicator (IRI) method shows that ISR’s steric hindrance and ISO’s rigid intramolecular hydrogen bond prevent receptor binding. The experimental CD spectra and TDDFT-calculated ECD spectra display near mirror-image features for the enantiomeric pairs, providing a chiroptical fingerprint for absolute-configuration assignment. This study combines quantum chemistry, spectroscopy, and target modeling to provide the first molecular-level explanation of the stereoselective activity of this chiral pesticide, which can support the accurate design of pesticides and environmental monitoring.

Abstract Image

异环seram立体选择性的结构和电子基础:手性异构体的DFT、光谱和对接研究
手性化合物由于其结构的差异而具有不同的物理化学性质和生物活性,因此表征手性化合物的结构与性质之间的关系具有重要意义。本研究首次利用DFT、实验光谱(ECD/UV)和分子对接技术,系统研究了新型杀虫剂异环丝氨酸的4个手性异构体(顺式-(+)-(5R,4S) ISR、顺式-(−)-(5S,4S) ISM、反式-(+)-(5R,4R) ISO、反式-(−)-(5S,4S) ISS)。在B3LYP/ 6-311G (d,p)和MP2/aug-cc-pVTZ上的结构优化结果表明,ISS是最稳定的异构体。表面静电势(ESP)和前沿分子轨道(FMO)分析结果表明,ISO具有最大的静电势和最小的能隙(4.533 eV)。分子对接表明ISM对2CBZ和8HNC受体表现出最有利的结合能(分别为- 8.57和- 9.37 kcal·mol⁻¹),并形成具有良好几何形状的多个氢键。通过相互作用区指示剂(IRI)方法分析非共价相互作用(NCI)表明,ISR的位阻和ISO的刚性分子内氢键阻止了受体的结合。实验的CD光谱和tddft计算的ECD光谱显示出对映体对的近镜像特征,为绝对构型分配提供了一个热学指纹。本研究结合量子化学、光谱学和靶标建模,首次从分子水平上解释了该手性农药的立体选择活性,为农药的精确设计和环境监测提供了支持。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Structure
Journal of Molecular Structure 化学-物理化学
CiteScore
7.10
自引率
15.80%
发文量
2384
审稿时长
45 days
期刊介绍: The Journal of Molecular Structure is dedicated to the publication of full-length articles and review papers, providing important new structural information on all types of chemical species including: • Stable and unstable molecules in all types of environments (vapour, molecular beam, liquid, solution, liquid crystal, solid state, matrix-isolated, surface-absorbed etc.) • Chemical intermediates • Molecules in excited states • Biological molecules • Polymers. The methods used may include any combination of spectroscopic and non-spectroscopic techniques, for example: • Infrared spectroscopy (mid, far, near) • Raman spectroscopy and non-linear Raman methods (CARS, etc.) • Electronic absorption spectroscopy • Optical rotatory dispersion and circular dichroism • Fluorescence and phosphorescence techniques • Electron spectroscopies (PES, XPS), EXAFS, etc. • Microwave spectroscopy • Electron diffraction • NMR and ESR spectroscopies • Mössbauer spectroscopy • X-ray crystallography • Charge Density Analyses • Computational Studies (supplementing experimental methods) We encourage publications combining theoretical and experimental approaches. The structural insights gained by the studies should be correlated with the properties, activity and/ or reactivity of the molecule under investigation and the relevance of this molecule and its implications should be discussed.
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