Infrared Spectral Descriptors for Reaction Yield Prediction: Toward Redefining Experimental Spaces.

IF 3.1 4区 医学 Q3 CHEMISTRY, MEDICINAL
Yuya Endo, Hiromasa Kaneko
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引用次数: 0

Abstract

Yield prediction in catalytic reactions is essential for improving chemical process efficiency and product quality. Ligands significantly influence reactivity and selectivity, highlighting the need for descriptors that accurately capture their structural and electronic properties. In this study, we focus on infrared (IR) spectra, which reflects molecular vibrational modes, and propose novel descriptors based on wavenumber information. We evaluated the predictive performance of these descriptors using two datasets: direct Pd-catalyzed arylation and Suzuki-Miyaura coupling reactions. The wavenumber-based IR descriptors outperformed conventional molecular descriptors and structural fingerprints (one-hot encoding, Mordred, MACCS, Morgan fingerprint, RDKit, and density functional theory). Notably, descriptors limited to the fingerprint region (0-1700 cm-1) effectively captured key molecular features, contributing to both high prediction accuracy and improved chemical interpretability. Our results indicate that IR-based descriptors can achieve strong generalization performance even with small datasets. This approach offers a promising strategy for redefining reaction condition spaces and enhancing the interpretability of predictive models, thereby supporting more informed experimental design.

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用于反应产率预测的红外光谱描述符:重新定义实验空间。
催化反应产率预测是提高化工过程效率和产品质量的重要手段。配体显著影响反应性和选择性,强调需要准确捕捉其结构和电子性质的描述符。在这项研究中,我们关注反映分子振动模式的红外光谱,并提出了基于波数信息的新描述符。我们使用两个数据集评估了这些描述符的预测性能:直接pd催化的芳基化和Suzuki-Miyaura偶联反应。基于波数的红外描述符优于传统的分子描述符和结构指纹(one-hot编码、Mordred、MACCS、Morgan指纹、RDKit和密度泛函理论)。值得注意的是,仅限于指纹区域(0-1700 cm-1)的描述符有效地捕获了关键的分子特征,有助于提高预测精度和提高化学可解释性。我们的研究结果表明,基于ir的描述符即使在小数据集上也能取得很强的泛化性能。这种方法为重新定义反应条件空间和增强预测模型的可解释性提供了一种有前途的策略,从而支持更明智的实验设计。
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来源期刊
Molecular Informatics
Molecular Informatics CHEMISTRY, MEDICINAL-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.30
自引率
2.80%
发文量
70
审稿时长
3 months
期刊介绍: Molecular Informatics is a peer-reviewed, international forum for publication of high-quality, interdisciplinary research on all molecular aspects of bio/cheminformatics and computer-assisted molecular design. Molecular Informatics succeeded QSAR & Combinatorial Science in 2010. Molecular Informatics presents methodological innovations that will lead to a deeper understanding of ligand-receptor interactions, macromolecular complexes, molecular networks, design concepts and processes that demonstrate how ideas and design concepts lead to molecules with a desired structure or function, preferably including experimental validation. The journal''s scope includes but is not limited to the fields of drug discovery and chemical biology, protein and nucleic acid engineering and design, the design of nanomolecular structures, strategies for modeling of macromolecular assemblies, molecular networks and systems, pharmaco- and chemogenomics, computer-assisted screening strategies, as well as novel technologies for the de novo design of biologically active molecules. As a unique feature Molecular Informatics publishes so-called "Methods Corner" review-type articles which feature important technological concepts and advances within the scope of the journal.
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