Mechanistic insights into cardiovascular toxicity induced by polycyclic aromatic hydrocarbons using Benzo[a]pyrene (BaP) as an example

IF 3.4 4区 生物学 Q2 BIOLOGY
Haoyue Jia , Hao Zhang , Chengyan Guan , Qiang Wan
{"title":"Mechanistic insights into cardiovascular toxicity induced by polycyclic aromatic hydrocarbons using Benzo[a]pyrene (BaP) as an example","authors":"Haoyue Jia ,&nbsp;Hao Zhang ,&nbsp;Chengyan Guan ,&nbsp;Qiang Wan","doi":"10.1016/j.compbiolchem.2026.108877","DOIUrl":null,"url":null,"abstract":"<div><div>Environmental contamination has emerged as a critical global public health challenge. Among persistent organic pollutants, polycyclic aromatic hydrocarbons (PAHs) exhibit concerning bioaccumulation potential in aquatic and terrestrial ecosystems, with demonstrated cardiotoxic effects in humans. Nevertheless, the precise molecular pathogenesis of PAH-mediated cardiovascular damage requires further elucidation. This investigation adopts a multi-modal computational strategy integrating network toxicology with molecular docking to systematically characterize PAH-induced cardiovascular toxicity mechanisms. Comprehensive toxicity profiling was performed through ADMETlab 3.0 and ProTox3.0 platforms, while putative molecular targets were identified via SwissTargetPrediction, ChEMBL, SEA, and CTD repositories. Disease-relevant targets were curated from GeneCards and OMIM databases. Integrated analysis combining Venn diagram, protein-protein interaction (PPI) network, and Cytoscape 3.9.1 visualization identified critical common targets. Functional annotation using Metascape and DAVID elucidated the crucial associated biological processes, cellular compartments, and molecular functions. Pathway enrichment analysis identified dominant signaling pathways, primarily the PI3K-AKT and MAPK cascades, along with those involved in hemodynamic stress/atherogenesis and oncogenic networks. Molecular docking coupled with molecular dynamics simulations further confirmed robust and energetically favorable interactions between PAH compounds and core toxicity targets. Collectively, using BaP as a paradigm, this in-silico study demonstrates an integrative computational workflow to investigate PAH-induced cardiovascular toxicity, proposing candidate molecular targets and pathways, which exemplifies the utility of multi-level bioinformatics in generating hypotheses for toxicological evaluation.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"122 ","pages":"Article 108877"},"PeriodicalIF":3.4000,"publicationDate":"2026-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927126000022","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/1/2 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Environmental contamination has emerged as a critical global public health challenge. Among persistent organic pollutants, polycyclic aromatic hydrocarbons (PAHs) exhibit concerning bioaccumulation potential in aquatic and terrestrial ecosystems, with demonstrated cardiotoxic effects in humans. Nevertheless, the precise molecular pathogenesis of PAH-mediated cardiovascular damage requires further elucidation. This investigation adopts a multi-modal computational strategy integrating network toxicology with molecular docking to systematically characterize PAH-induced cardiovascular toxicity mechanisms. Comprehensive toxicity profiling was performed through ADMETlab 3.0 and ProTox3.0 platforms, while putative molecular targets were identified via SwissTargetPrediction, ChEMBL, SEA, and CTD repositories. Disease-relevant targets were curated from GeneCards and OMIM databases. Integrated analysis combining Venn diagram, protein-protein interaction (PPI) network, and Cytoscape 3.9.1 visualization identified critical common targets. Functional annotation using Metascape and DAVID elucidated the crucial associated biological processes, cellular compartments, and molecular functions. Pathway enrichment analysis identified dominant signaling pathways, primarily the PI3K-AKT and MAPK cascades, along with those involved in hemodynamic stress/atherogenesis and oncogenic networks. Molecular docking coupled with molecular dynamics simulations further confirmed robust and energetically favorable interactions between PAH compounds and core toxicity targets. Collectively, using BaP as a paradigm, this in-silico study demonstrates an integrative computational workflow to investigate PAH-induced cardiovascular toxicity, proposing candidate molecular targets and pathways, which exemplifies the utility of multi-level bioinformatics in generating hypotheses for toxicological evaluation.
以苯并[a]芘(BaP)为例,对多环芳烃引起的心血管毒性的机理研究。
环境污染已成为一项重大的全球公共卫生挑战。在持久性有机污染物中,多环芳烃(PAHs)在水生和陆地生态系统中具有生物蓄积潜力,对人类具有心脏毒性作用。然而,多环芳烃介导的心血管损伤的确切分子发病机制需要进一步阐明。本研究采用网络毒理学与分子对接相结合的多模态计算策略,系统表征多环芳烃诱导的心血管毒性机制。通过ADMETlab 3.0和ProTox3.0平台进行全面的毒性分析,同时通过SwissTargetPrediction、ChEMBL、SEA和CTD库确定可能的分子靶点。从GeneCards和OMIM数据库中筛选疾病相关靶标。结合维恩图、蛋白蛋白相互作用(PPI)网络和Cytoscape 3.9.1可视化的综合分析确定了关键的共同靶点。使用metscape和DAVID的功能注释阐明了关键的相关生物学过程、细胞区室和分子功能。途径富集分析确定了主要的信号通路,主要是PI3K-AKT和MAPK级联,以及参与血流动力学应激/动脉粥样硬化和致癌网络的信号通路。分子对接结合分子动力学模拟进一步证实了多环芳烃化合物与核心毒性靶点之间强大且能量有利的相互作用。总的来说,以BaP为范例,本计算机研究展示了一个综合计算工作流来研究多环芳烃诱导的心血管毒性,提出了候选分子靶点和途径,这体现了多层次生物信息学在产生毒理学评估假设方面的实用性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Computational Biology and Chemistry
Computational Biology and Chemistry 生物-计算机:跨学科应用
CiteScore
6.10
自引率
3.20%
发文量
142
审稿时长
24 days
期刊介绍: Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered. Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered. Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信
小红书