{"title":"Mechanistic insights into cardiovascular toxicity induced by polycyclic aromatic hydrocarbons using Benzo[a]pyrene (BaP) as an example","authors":"Haoyue Jia , Hao Zhang , Chengyan Guan , Qiang Wan","doi":"10.1016/j.compbiolchem.2026.108877","DOIUrl":null,"url":null,"abstract":"<div><div>Environmental contamination has emerged as a critical global public health challenge. Among persistent organic pollutants, polycyclic aromatic hydrocarbons (PAHs) exhibit concerning bioaccumulation potential in aquatic and terrestrial ecosystems, with demonstrated cardiotoxic effects in humans. Nevertheless, the precise molecular pathogenesis of PAH-mediated cardiovascular damage requires further elucidation. This investigation adopts a multi-modal computational strategy integrating network toxicology with molecular docking to systematically characterize PAH-induced cardiovascular toxicity mechanisms. Comprehensive toxicity profiling was performed through ADMETlab 3.0 and ProTox3.0 platforms, while putative molecular targets were identified via SwissTargetPrediction, ChEMBL, SEA, and CTD repositories. Disease-relevant targets were curated from GeneCards and OMIM databases. Integrated analysis combining Venn diagram, protein-protein interaction (PPI) network, and Cytoscape 3.9.1 visualization identified critical common targets. Functional annotation using Metascape and DAVID elucidated the crucial associated biological processes, cellular compartments, and molecular functions. Pathway enrichment analysis identified dominant signaling pathways, primarily the PI3K-AKT and MAPK cascades, along with those involved in hemodynamic stress/atherogenesis and oncogenic networks. Molecular docking coupled with molecular dynamics simulations further confirmed robust and energetically favorable interactions between PAH compounds and core toxicity targets. Collectively, using BaP as a paradigm, this in-silico study demonstrates an integrative computational workflow to investigate PAH-induced cardiovascular toxicity, proposing candidate molecular targets and pathways, which exemplifies the utility of multi-level bioinformatics in generating hypotheses for toxicological evaluation.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"122 ","pages":"Article 108877"},"PeriodicalIF":3.4000,"publicationDate":"2026-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927126000022","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2026/1/2 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Environmental contamination has emerged as a critical global public health challenge. Among persistent organic pollutants, polycyclic aromatic hydrocarbons (PAHs) exhibit concerning bioaccumulation potential in aquatic and terrestrial ecosystems, with demonstrated cardiotoxic effects in humans. Nevertheless, the precise molecular pathogenesis of PAH-mediated cardiovascular damage requires further elucidation. This investigation adopts a multi-modal computational strategy integrating network toxicology with molecular docking to systematically characterize PAH-induced cardiovascular toxicity mechanisms. Comprehensive toxicity profiling was performed through ADMETlab 3.0 and ProTox3.0 platforms, while putative molecular targets were identified via SwissTargetPrediction, ChEMBL, SEA, and CTD repositories. Disease-relevant targets were curated from GeneCards and OMIM databases. Integrated analysis combining Venn diagram, protein-protein interaction (PPI) network, and Cytoscape 3.9.1 visualization identified critical common targets. Functional annotation using Metascape and DAVID elucidated the crucial associated biological processes, cellular compartments, and molecular functions. Pathway enrichment analysis identified dominant signaling pathways, primarily the PI3K-AKT and MAPK cascades, along with those involved in hemodynamic stress/atherogenesis and oncogenic networks. Molecular docking coupled with molecular dynamics simulations further confirmed robust and energetically favorable interactions between PAH compounds and core toxicity targets. Collectively, using BaP as a paradigm, this in-silico study demonstrates an integrative computational workflow to investigate PAH-induced cardiovascular toxicity, proposing candidate molecular targets and pathways, which exemplifies the utility of multi-level bioinformatics in generating hypotheses for toxicological evaluation.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.