A decomposition of Fisher's information to inform sample size for developing or updating fair and precise clinical prediction models - part 2: time-to-event outcomes.

IF 3.9
Richard D Riley, Gary S Collins, Lucinda Archer, Rebecca Whittle, Amardeep Legha, Laura Kirton, Paula Dhiman, Mohsen Sadatsafavi, Nicola J Adderley, Joseph Alderman, Glen P Martin, Joie Ensor
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Abstract

Background: When developing a clinical prediction model using time-to-event data (i.e. with censoring and different lengths of follow-up), previous research focuses on the sample size needed to minimise overfitting and precisely estimating the overall risk. However, instability of individual-level risk estimates may still be large.

Methods: We propose using a decomposition of Fisher's information matrix to help examine and calculate the sample size required for developing a model that aims for precise and fair risk estimates. We propose a six-step process which can be used either before data collection or when an existing dataset is available. Steps 1 to 5 require researchers to specify the overall risk in the target population at a key time-point of interest: an assumed pragmatic 'core model' in the form of an exponential regression model, the (anticipated) joint distribution of core predictors included in that model and the distribution of censoring times. The 'core model' can be specified directly or based on a specified C-index and relative effects of (standardised) predictors. The joint distribution of predictors may be available directly in an existing dataset, in a pilot study or in a synthetic dataset provided by other researchers.

Results: We derive closed-form solutions that decompose the variance of an individual's estimated event rate into Fisher's unit information matrix, predictor values and total sample size; this allows researchers to calculate and examine uncertainty distributions around individual risk estimates and misclassification probabilities for specified sample sizes. We provide an illustrative example in breast cancer and emphasise the importance of clinical context, including any risk thresholds for decision-making, and examine fairness concerns for pre- and postmenopausal women. Lastly, in two empirical evaluations, we provide reassurance that uncertainty interval widths based on our exponential approach are close to using more flexible parametric models.

Conclusions: Our approach allows users to identify the (target) sample size required to develop a prediction model for time-to-event outcomes, via the pmstabilityss module. It aims to facilitate models with improved trust, reliability and fairness in individual-level predictions.

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Abstract Image

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分解Fisher的信息,为开发或更新公平和精确的临床预测模型提供样本量-第2部分:时间到事件结果。
背景:在使用事件发生时间数据(即通过审查和不同随访时间)开发临床预测模型时,以前的研究主要关注最小化过拟合所需的样本量和精确估计总体风险。然而,个人层面风险估计的不稳定性可能仍然很大。方法:我们建议使用Fisher信息矩阵的分解来帮助检查和计算开发模型所需的样本量,该模型旨在进行精确和公平的风险估计。我们提出了一个六步流程,既可以在数据收集之前使用,也可以在现有数据集可用时使用。步骤1至步骤5要求研究人员在关键时间点指定目标人群的总体风险:以指数回归模型的形式假设的实用“核心模型”,该模型中包含的核心预测因子的(预期的)联合分布以及审查时间的分布。“核心模型”可以直接指定,也可以基于指定的c指数和(标准化)预测因子的相对影响。预测因子的联合分布可以直接从现有数据集、试点研究或其他研究人员提供的合成数据集中获得。结果:我们得到了封闭形式的解,将个体估计事件率的方差分解为Fisher单位信息矩阵、预测值和总样本量;这使得研究人员可以计算和检查特定样本量的个体风险估计和错误分类概率周围的不确定性分布。我们在乳腺癌中提供了一个说明性的例子,强调临床背景的重要性,包括决策的任何风险阈值,并检查绝经前和绝经后妇女的公平性问题。最后,在两个经验评估中,我们保证基于我们的指数方法的不确定性区间宽度接近于使用更灵活的参数模型。结论:我们的方法允许用户通过pmstabilityss模块确定所需的(目标)样本量,以开发时间到事件结果的预测模型。它旨在促进模型在个人层面的预测中具有更高的信任度、可靠性和公平性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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