Disclosure of Potential Therapeutic Targets in Plumbagin for Treating Osteosarcoma.

IF 3.1 Q3 ENGINEERING, BIOMEDICAL
Biomedical Engineering and Computational Biology Pub Date : 2025-12-12 eCollection Date: 2025-01-01 DOI:10.1177/11795972251405146
Rubiao Qiu, Xueyu Li, Yanjuan Li, Fufeng Yuan, Zhongxi Cen, Guoshu Huang, Xiong Chen, Chaohui Fan, Muhua Liang
{"title":"Disclosure of Potential Therapeutic Targets in Plumbagin for Treating Osteosarcoma.","authors":"Rubiao Qiu, Xueyu Li, Yanjuan Li, Fufeng Yuan, Zhongxi Cen, Guoshu Huang, Xiong Chen, Chaohui Fan, Muhua Liang","doi":"10.1177/11795972251405146","DOIUrl":null,"url":null,"abstract":"<p><p>Osteosarcoma is one of most malignant bone tumors in children, characterized by high recurrence and metastasis. Plumbagin refers to a bioactive compound that is isolated the herb plant of from <i>Plumbagozeylanica zeylanica L.</i>, and it has been proven with potential anti-tumor benefits, including osteosarcoma. However, its pharmacological mechanism remains unclear comprehensively. Thus, this study aimed to reveal potential targets and molecular mechanisms in plumbagin for treating osteosarcoma through bioinformatics method and computational validation. In total, respective 379, 2727 and 2166 genes were ascertained as target genes of plumbagin, osteosarcoma and autophagy. A total of 40 shared genes were identified among plumbagin, osteosarcoma and autophagy. Further, additional 10 core genes were identified and used for enrichment analysis. The findings highlighted the regulatory actions of plumbagin on protein-binding, regulation of autophagy for playing anti-osteosarcoma role. Enriched pathway analysis findings disclosed main molecular pathways, including microRNAs in cancer signaling pathway, Notch signaling pathway. Molecular docking data found that the optimal docking affinity and binding energy between plumbagin and scored protein receptors of glycogen synthase kinase 3 beta (GSK3B), histone deacetylase 2 (HDAC2), poly (ADP-ribose) polymerase 1 (PARP1). Our preclinical study investigates the possible therapeutic mechanism of plumbagin against osteosarcoma, indicating that plumbagin exhibited anti-osteosarcoma features via regulation of core target genes associated with autophagy. Current research findings may provide the scientific ideas and evidences for screening bioactive compound against osteosarcoma.</p>","PeriodicalId":42484,"journal":{"name":"Biomedical Engineering and Computational Biology","volume":"16 ","pages":"11795972251405146"},"PeriodicalIF":3.1000,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12701221/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomedical Engineering and Computational Biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1177/11795972251405146","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q3","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Osteosarcoma is one of most malignant bone tumors in children, characterized by high recurrence and metastasis. Plumbagin refers to a bioactive compound that is isolated the herb plant of from Plumbagozeylanica zeylanica L., and it has been proven with potential anti-tumor benefits, including osteosarcoma. However, its pharmacological mechanism remains unclear comprehensively. Thus, this study aimed to reveal potential targets and molecular mechanisms in plumbagin for treating osteosarcoma through bioinformatics method and computational validation. In total, respective 379, 2727 and 2166 genes were ascertained as target genes of plumbagin, osteosarcoma and autophagy. A total of 40 shared genes were identified among plumbagin, osteosarcoma and autophagy. Further, additional 10 core genes were identified and used for enrichment analysis. The findings highlighted the regulatory actions of plumbagin on protein-binding, regulation of autophagy for playing anti-osteosarcoma role. Enriched pathway analysis findings disclosed main molecular pathways, including microRNAs in cancer signaling pathway, Notch signaling pathway. Molecular docking data found that the optimal docking affinity and binding energy between plumbagin and scored protein receptors of glycogen synthase kinase 3 beta (GSK3B), histone deacetylase 2 (HDAC2), poly (ADP-ribose) polymerase 1 (PARP1). Our preclinical study investigates the possible therapeutic mechanism of plumbagin against osteosarcoma, indicating that plumbagin exhibited anti-osteosarcoma features via regulation of core target genes associated with autophagy. Current research findings may provide the scientific ideas and evidences for screening bioactive compound against osteosarcoma.

Abstract Image

Abstract Image

Abstract Image

白桦素治疗骨肉瘤潜在治疗靶点的披露。
骨肉瘤是儿童最常见的恶性骨肿瘤之一,具有高复发和转移的特点。白桦白花素是指从白桦白花中草药植物中分离出来的一种生物活性化合物,它已被证明具有潜在的抗肿瘤作用,包括骨肉瘤。然而,其药理机制尚不全面。因此,本研究旨在通过生物信息学方法和计算验证,揭示白桦素治疗骨肉瘤的潜在靶点和分子机制。共鉴定出水蛭素靶基因379、骨肉瘤靶基因2727、自噬靶基因2166个。在白蜡蛋白、骨肉瘤和自噬中共鉴定出40个共享基因。进一步,鉴定了另外10个核心基因并用于富集分析。研究结果强调了白桦素对蛋白结合、自噬的调节作用,从而发挥抗骨肉瘤的作用。丰富的通路分析结果揭示了主要的分子通路,包括肿瘤信号通路中的microrna、Notch信号通路。分子对接数据发现,白丹素与评分蛋白受体糖原合成酶激酶3 β (GSK3B)、组蛋白去乙酰化酶2 (HDAC2)、聚(adp -核糖)聚合酶1 (PARP1)的最佳对接亲和力和结合能。我们的临床前研究探讨了白桦素治疗骨肉瘤的可能机制,表明白桦素通过调控与自噬相关的核心靶基因表现出抗骨肉瘤的特征。目前的研究成果可为筛选抗骨肉瘤生物活性化合物提供科学思路和依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
自引率
0.00%
发文量
1
审稿时长
8 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信
小红书