Assessment of GFN-FF and GFN2-xTB methods for binding free energy calculations: Application to cucurbit[7]uril-cationic guest complexes

IF 2.9 3区 化学 Q3 CHEMISTRY, PHYSICAL
Wissam Helal
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引用次数: 0

Abstract

The performance of two cost-efficient computational methods, the semiempirical extended tight-binding GFN2-xTB and the GFN-FF force field, was assessed for predicting the binding free energies of cucurbit[7]uril host–guest complexes with a series of cationic ammonium guests. Binding energies were computed via the supermolecular approach and decomposed into gas-phase interaction, thermostatistical, and solvation components. Both methods reproduce the general energetic trends of experimental binding affinities, with GFN-FF yielding lower mean absolute errors and standard deviations. However, the GFN2-xTB geometries are consistently closer to high-level DFT reference structures. The results indicate that while GFN-FF offers substantial computational efficiency and acceptable accuracy for screening purposes, its apparent energetic agreement may arise partly from error cancellation rather than superior physical description. The study also highlights the limitations of the single-structure supermolecular approach, particularly for flexible host–guest systems, where conformational sampling are required for a quantitatively reliable description of binding thermodynamics.

Abstract Image

GFN-FF和GFN2-xTB结合自由能计算方法的评估:在葫芦[7]脲-阳离子客体配合物中的应用
评价了半经验扩展紧密结合GFN2-xTB和GFN-FF力场两种具有成本效益的计算方法在预测葫芦[7]- uril主客体配合物与一系列阳离子铵客体结合自由能方面的性能。通过超分子方法计算结合能,并将其分解为气相相互作用、热统计和溶剂化组分。两种方法都再现了实验结合亲和的一般能量趋势,GFN-FF产生更低的平均绝对误差和标准偏差。然而,GFN2-xTB几何形状始终更接近于高级DFT参考结构。结果表明,虽然GFN-FF为筛选目的提供了可观的计算效率和可接受的准确性,但其明显的能量一致性可能部分来自误差消除,而不是优越的物理描述。该研究还强调了单结构超分子方法的局限性,特别是对于灵活的主客体系统,其中需要进行构象采样以定量可靠地描述结合热力学。
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来源期刊
CiteScore
4.20
自引率
10.70%
发文量
331
审稿时长
31 days
期刊介绍: Computational and Theoretical Chemistry publishes high quality, original reports of significance in computational and theoretical chemistry including those that deal with problems of structure, properties, energetics, weak interactions, reaction mechanisms, catalysis, and reaction rates involving atoms, molecules, clusters, surfaces, and bulk matter.
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