Fluorine-activated and -directed allene cycloadditions with nitrile oxide: Exploration of selectivities, reactivities, energetic aspects, and molecular mechanism

IF 3.1 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS
Mousa Soleymani , Mahdieh Goudarzi
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Abstract

This work investigates theoretically the activation and directing effects in a fluorinated allenic system, 1-(5,5-difluoropenta-3,4-dienyl)benzene (FPB), during a Cu+-catalyzed cycloaddition reaction with phenyl nitrile oxide (NO). The FPB…Cu+ interactions were studied and it was found coordination of Cu+ ion to the central carbon atom of the allenic system and a cation-π interaction in the most stable complex. Four potential possible reaction paths were considered between FPB and NO and the computational results corroborated the experimental findings, indicating that the formation of CA-2 is favored in uncatalyzed reaction, whereas CA-3 formation is preferred in catalyzed one. The calculated energy difference between the most stable and unstable TS is about 32 kJ/mol for the uncatalyzed system, a value that increases to 192 kJ/mol under catalysis. Furthermore, the computed activation Gibbs free energy for TS-2 (the most favorable transition state in uncatalyzed reaction) is 101.03 kJ/mol and that for TS-3-cat (the most favorable TS in catalyzed reaction) is 92.02 kJ/mol. Consequently, the catalyst is shown to be effective not only in decreasing the activation barrier but also in controlling the regioselectivity of the reaction by increasing the difference between the energy surfaces of TSs. The regioselectivity was rationalized through Natural Bond Orbital NBO (based on Ei→j(2) values resulted from E(2) perturbation theory) and Independent Gradient Model based on Hirshfeld partition (IGMH) analyses. Finally, application of the Electron Localization Function (ELF) analysis revealed the molecular mechanism to be a two-stage one-step mechanism in both cases.

Abstract Image

氟活化的和定向的烯环与氧化腈的加成:选择性、反应性、能量方面和分子机制的探索。
本文从理论上研究了Cu+催化的苯基腈氧化物(NO)环加成反应中1-(5,5-二氟戊-3,4-二烯基)苯(FPB)的活化和导向作用。研究了FPB和Cu+的相互作用,发现在最稳定的配合物中,Cu+离子与中心碳原子配位,并存在阳离子-π相互作用。考虑了四种可能的FPB与NO之间的反应路径,计算结果与实验结果一致,表明非催化反应有利于CA-2的生成,催化反应有利于CA-3的生成。在未催化的体系中,计算出的最稳定TS和不稳定TS之间的能量差约为32 kJ/mol,在催化作用下,该值增加到192 kJ/mol。计算得到TS-2(非催化反应中最有利过渡态)和TS-3-cat(催化反应中最有利过渡态)的活化吉布斯自由能分别为101.03 kJ/mol和92.02 kJ/mol。结果表明,该催化剂不仅可以有效地降低反应的激活势垒,而且可以通过增加TSs的能面之间的差来控制反应的区域选择性。通过自然键轨道NBO(基于E(2)微扰理论得到的Ei→j(2)值)和基于Hirshfeld划分(IGMH)分析的独立梯度模型对区域选择性进行合理化。最后,应用电子定位函数(ELF)分析表明,这两种情况下的分子机制均为两阶段一步机制。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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