PHIDE: A Parallel Hybrid Direct–Iterative Eigensolver for Hermitian Eigenvalue Problems

IF 5.9 2区 计算机科学 Q1 COMPUTER SCIENCE, THEORY & METHODS
Shengguo Li;Xinzhe Wu;Jose E. Roman;Ziyang Yuan;Ruibo Wang;Tiejun Li;Yi Xie;Bo Yang;Xuguang Chen
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引用次数: 0

Abstract

In this paper, we propose a Parallel Hybrid Direct–Iterative Eigensolver for Hermitian Eigenvalue Problems without tridiagonalization, denoted by PHIDE, which combines direct and iterative methods. PHIDE first reduces a Hermitian matrix to banded form, then applies a spectrum slicing algorithm to the banded matrix, and finally computes the eigenvectors of the original matrix via backtransformation. Compared with conventional direct eigensolvers, PHIDE avoids tridiagonalization, which involves many memory-bound operations. In PHIDE, the banded eigenvalue problem is solved using the contour integral method implemented in FEAST, which may yield slightly lower accuracy than tridiagonalization-based approaches. For sequences of correlated Hermitian eigenvalue problems arising in density functional theory (DFT), PHIDE achieves an average speedup of $1.22\times$ over the state-of-the-art direct solver in ELPA when using 1024 processes. Numerical experiments are conducted on dense Hermitian matrices from real applications as well as large sparse matrices from the SuiteSparse and ELSES collections.
厄密特征值问题的并行混合直接迭代特征解
本文提出了一种不带三对角化的厄米特特征值问题的并行混合直接迭代特征解算法,用PHIDE表示,它结合了直接法和迭代法。该算法首先将厄米矩阵化简为条带形式,然后对条带矩阵进行频谱切片算法,最后通过反变换计算原始矩阵的特征向量。与传统的直接特征解法相比,PHIDE避免了涉及许多内存约束操作的三对角化。在PHIDE中,带状特征值问题使用FEAST中实现的轮廓积分方法来解决,该方法的精度可能略低于基于三对角化的方法。对于密度泛函理论(DFT)中出现的相关厄米特征值问题序列,当使用1024个进程时,PHIDE比ELPA中最先进的直接求解器实现了1.22倍的平均加速。在实际应用中的密集厄米矩阵以及来自SuiteSparse和ELSES集合的大型稀疏矩阵上进行了数值实验。
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来源期刊
IEEE Transactions on Parallel and Distributed Systems
IEEE Transactions on Parallel and Distributed Systems 工程技术-工程:电子与电气
CiteScore
11.00
自引率
9.40%
发文量
281
审稿时长
5.6 months
期刊介绍: IEEE Transactions on Parallel and Distributed Systems (TPDS) is published monthly. It publishes a range of papers, comments on previously published papers, and survey articles that deal with the parallel and distributed systems research areas of current importance to our readers. Particular areas of interest include, but are not limited to: a) Parallel and distributed algorithms, focusing on topics such as: models of computation; numerical, combinatorial, and data-intensive parallel algorithms, scalability of algorithms and data structures for parallel and distributed systems, communication and synchronization protocols, network algorithms, scheduling, and load balancing. b) Applications of parallel and distributed computing, including computational and data-enabled science and engineering, big data applications, parallel crowd sourcing, large-scale social network analysis, management of big data, cloud and grid computing, scientific and biomedical applications, mobile computing, and cyber-physical systems. c) Parallel and distributed architectures, including architectures for instruction-level and thread-level parallelism; design, analysis, implementation, fault resilience and performance measurements of multiple-processor systems; multicore processors, heterogeneous many-core systems; petascale and exascale systems designs; novel big data architectures; special purpose architectures, including graphics processors, signal processors, network processors, media accelerators, and other special purpose processors and accelerators; impact of technology on architecture; network and interconnect architectures; parallel I/O and storage systems; architecture of the memory hierarchy; power-efficient and green computing architectures; dependable architectures; and performance modeling and evaluation. d) Parallel and distributed software, including parallel and multicore programming languages and compilers, runtime systems, operating systems, Internet computing and web services, resource management including green computing, middleware for grids, clouds, and data centers, libraries, performance modeling and evaluation, parallel programming paradigms, and programming environments and tools.
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