E Goya-Jorge, M Pedraza-Beltrán, R T Pareja-Rodríguez, C D Torres-Zulueta, Y Cañizares-Carmenate, M E Jorge Rodríguez, M Sylla-Iyarreta Veitía
{"title":"Warfarin derivatives as free radical scavengers: a coumarin scaffold-based linear regression model with in vitro validation.","authors":"E Goya-Jorge, M Pedraza-Beltrán, R T Pareja-Rodríguez, C D Torres-Zulueta, Y Cañizares-Carmenate, M E Jorge Rodríguez, M Sylla-Iyarreta Veitía","doi":"10.1080/1062936X.2025.2591659","DOIUrl":null,"url":null,"abstract":"<p><p>Antioxidant agents that efficiently scavenge reactive oxygen species (ROS) are of great interest in medicinal chemistry for their potential to mitigate oxidative stress-related pathologies. In this work, we developed an interpretable Multiple Linear Regression (MLR) QSAR model using seven molecular descriptors (D/Dr05, MATS2v, MATS8p, Mor24m, L2s, HATS3u, H8m) to predict the free radical scavenging activity of coumarin-based compounds as measured by the IC<sub>50</sub> in the DPPH assay. The MLR-QSAR model showed strong goodness-of-fit and robust internal and external validation parameters (<i>r</i><sup>2</sup> = 81.04, <i>Q</i><sup>2</sup><sub>LOO</sub> = 77.93, <i>Q</i><sup>2</sup><sub>boot</sub> = 76.78, <i>r</i><sup>2</sup><sub>ext</sub> = 75.38, <i>y</i><sub><i>s</i>cramble</sub><i>r</i><sup>2</sup> = 0.25), supporting its predictive reliability. We applied the model to predict the antiradical potential of a novel set of Warfarin derivatives, a class of molecules historically known for anticoagulant properties but with unexplored antioxidant potential. Experimental in vitro DPPH assays on the seven Warfarin derivatives (WD) revealed a positive correlation (<i>r</i> = 0.63) with the predictions, validating the MLR-QSAR as a screening tool. Furthermore, all WD exhibited significant DPPH radical scavenging activity, demonstrating the chemical antioxidant potential of an anticoagulant-derived scaffold. This dual in silico-in vitro strategy highlights the value of interpretable QSAR models for guiding compound prioritization and structural optimization towards new coumarin-based antioxidants.</p>","PeriodicalId":21446,"journal":{"name":"SAR and QSAR in Environmental Research","volume":" ","pages":"1105-1116"},"PeriodicalIF":2.8000,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"SAR and QSAR in Environmental Research","FirstCategoryId":"93","ListUrlMain":"https://doi.org/10.1080/1062936X.2025.2591659","RegionNum":3,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/12/4 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Antioxidant agents that efficiently scavenge reactive oxygen species (ROS) are of great interest in medicinal chemistry for their potential to mitigate oxidative stress-related pathologies. In this work, we developed an interpretable Multiple Linear Regression (MLR) QSAR model using seven molecular descriptors (D/Dr05, MATS2v, MATS8p, Mor24m, L2s, HATS3u, H8m) to predict the free radical scavenging activity of coumarin-based compounds as measured by the IC50 in the DPPH assay. The MLR-QSAR model showed strong goodness-of-fit and robust internal and external validation parameters (r2 = 81.04, Q2LOO = 77.93, Q2boot = 76.78, r2ext = 75.38, yscrambler2 = 0.25), supporting its predictive reliability. We applied the model to predict the antiradical potential of a novel set of Warfarin derivatives, a class of molecules historically known for anticoagulant properties but with unexplored antioxidant potential. Experimental in vitro DPPH assays on the seven Warfarin derivatives (WD) revealed a positive correlation (r = 0.63) with the predictions, validating the MLR-QSAR as a screening tool. Furthermore, all WD exhibited significant DPPH radical scavenging activity, demonstrating the chemical antioxidant potential of an anticoagulant-derived scaffold. This dual in silico-in vitro strategy highlights the value of interpretable QSAR models for guiding compound prioritization and structural optimization towards new coumarin-based antioxidants.
期刊介绍:
SAR and QSAR in Environmental Research is an international journal welcoming papers on the fundamental and practical aspects of the structure-activity and structure-property relationships in the fields of environmental science, agrochemistry, toxicology, pharmacology and applied chemistry. A unique aspect of the journal is the focus on emerging techniques for the building of SAR and QSAR models in these widely varying fields. The scope of the journal includes, but is not limited to, the topics of topological and physicochemical descriptors, mathematical, statistical and graphical methods for data analysis, computer methods and programs, original applications and comparative studies. In addition to primary scientific papers, the journal contains reviews of books and software and news of conferences. Special issues on topics of current and widespread interest to the SAR and QSAR community will be published from time to time.