Yifei Yue, Athulya S. Palakkal, Saad Aldin Mohamed and Jianwen Jiang
{"title":"Digital design and discovery of biological metal–organic frameworks for gas signaling","authors":"Yifei Yue, Athulya S. Palakkal, Saad Aldin Mohamed and Jianwen Jiang","doi":"10.1039/D5DD00213C","DOIUrl":null,"url":null,"abstract":"<p >Metal–organic frameworks (MOFs) are intriguing nanoporous materials with a wide variety of potential applications. Recent efforts in extending the functionalities of MOFs toward biological applications have inspired the development of Bio-MOFs comprising biological building blocks. Yet, while numerous experimental studies have attempted to synthesize different Bio-MOFs, computational screening of Bio-MOFs is impeded by the limited number of Bio-MOFs currently available. Here, we design a <strong>Bio-hMOF</strong> database containing 17 681 hypothetical structures, assembled from the fragments of 309 experimental Bio-MOFs, with rigorous geometry optimization and structural checks. Subsequently, a possible biological application of the <strong>Bio-hMOFs</strong> is demonstrated for the selective adsorption of signaling gases NO and CO. The effects of different inorganic and organic fragments on the mechanical properties of <strong>Bio-hMOFs</strong> are also examined. Finally, we identify mechanically stable <strong>Bio-hMOFs</strong> promising for selective NO/CO adsorption and holistically analyze the trade-off between adsorption capacity and mechanical strength. The digital <strong>Bio-hMOF</strong> database is available publicly, in which future studies can be leveraged to discover top candidates and unveil new structure–property insights into the further design of Bio-MOFs for targeted biological applications.</p>","PeriodicalId":72816,"journal":{"name":"Digital discovery","volume":" 10","pages":" 3008-3017"},"PeriodicalIF":6.2000,"publicationDate":"2025-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/dd/d5dd00213c?page=search","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Digital discovery","FirstCategoryId":"1085","ListUrlMain":"https://pubs.rsc.org/en/content/articlelanding/2025/dd/d5dd00213c","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Metal–organic frameworks (MOFs) are intriguing nanoporous materials with a wide variety of potential applications. Recent efforts in extending the functionalities of MOFs toward biological applications have inspired the development of Bio-MOFs comprising biological building blocks. Yet, while numerous experimental studies have attempted to synthesize different Bio-MOFs, computational screening of Bio-MOFs is impeded by the limited number of Bio-MOFs currently available. Here, we design a Bio-hMOF database containing 17 681 hypothetical structures, assembled from the fragments of 309 experimental Bio-MOFs, with rigorous geometry optimization and structural checks. Subsequently, a possible biological application of the Bio-hMOFs is demonstrated for the selective adsorption of signaling gases NO and CO. The effects of different inorganic and organic fragments on the mechanical properties of Bio-hMOFs are also examined. Finally, we identify mechanically stable Bio-hMOFs promising for selective NO/CO adsorption and holistically analyze the trade-off between adsorption capacity and mechanical strength. The digital Bio-hMOF database is available publicly, in which future studies can be leveraged to discover top candidates and unveil new structure–property insights into the further design of Bio-MOFs for targeted biological applications.