Integration of proteomic and transcriptomic data of the venom and venom gland from Tityus jaimei.

IF 2.8 2区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS
Ana Escobar, Marcos H Salazar, Magdalena Hernández-Ortiz, Herlinda Clement, Sergio Encarnación, John Cleghorn, Hildaura Acosta, Gerardo Corzo
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引用次数: 0

Abstract

This work presents a comprehensive transcriptomic and proteomic analysis of the venom gland and venom of Tityus jaimei, a recently described scorpion species of medical relevance in Panama and Costa Rica. High-throughput RNA sequencing (RNA-seq) and tandem mass spectrometry (MS/MS) enabled the identification of a diverse repertoire of venom proteins. Notably, this is the first report of proteins belonging to the nucleotide pyrophosphatase/phosphodiesterase and knottins families in the venom proteome of a scorpion from the genus Tityus. In addition, several known venom protein families were identified, including hyaluronidases, voltage-gated sodium and potassium channel toxins, lipolysis-activating peptides (LVPs), cysteine-rich secretory proteins (CRISPs), metalloproteinases, peptidylglycine alpha-hydroxylating monooxygenases (PHMs), serine proteases, alpha-amylases, single insulin-like growth factor-binding domain proteins, non-disulfide-bridged peptides (NDBPs), chitinases, cyclotide trypsin inhibitors, and calcin-like peptides. The identification of 16 distinct families in the venom of Tityus jaimei offers novel insights into its composition and the diversity of Tityus venoms in Central America. Finally, the use of IA to protein domain search for protein annotation. SIGNIFICANCE T JAIMEI: In this work, we present a comprehensive transcriptomic and proteomic analysis of the venom gland and venom of Tityus jaimei, a recently described scorpion species of medical relevance in Panama and Costa Rica. Notably, we report for the first time proteins belonging to the nucleotide pyrophosphatase/phosphodiesterase and knottins families in the venom proteome of a scorpion from the genus Tityus. In addition, several known venom protein families were identified, including hyaluronidases, voltage-gated sodium and potassium channel toxins, lipolysis-activating peptides (LVPs), cysteine-rich secretory proteins (CRISPs), metalloproteinases, peptidylglycine alpha-hydroxylating monooxygenases (PHMs), serine proteases, alpha-amylases, single insulin-like growth factor-binding domain proteins, non-disulfide-bridged peptides (NDBPs), chitinases, cyclotide trypsin inhibitors, and calcin-like peptides. The identification of 16 distinct families in the venom of Tityus jaimei offers novel insights into its composition and the diversity of Tityus venoms in Central America.

鲫鱼毒液和毒腺蛋白质组学和转录组学数据的整合。
这项工作提出了一个全面的转录组学和蛋白质组学分析的毒腺和毒的Tityus jaimei,一个最近在巴拿马和哥斯达黎加的医学相关描述的蝎子物种。高通量RNA测序(RNA-seq)和串联质谱(MS/MS)能够鉴定多种毒液蛋白质。值得注意的是,这是首次报道在蝎属毒液蛋白质组中发现核苷酸焦磷酸酶/磷酸二酯酶和结蛋白家族的蛋白质。此外,还鉴定了几个已知的蛇毒蛋白家族,包括透明质酸酶、电压门控钠和钾通道毒素、脂肪酶激活肽(LVPs)、富含半胱氨酸的分泌蛋白(CRISPs)、金属蛋白酶、肽酰甘氨酸-羟化单加氧酶(PHMs)、丝氨酸蛋白酶、α -淀粉酶、单胰岛素样生长因子结合域蛋白、非二硫桥接肽(NDBPs)、几丁质酶、环肽胰蛋白酶抑制剂、和钙蛋白样肽。在jaimei Tityus毒液中鉴定出16个不同的家族,为中美洲Tityus毒液的组成和多样性提供了新的见解。最后,利用IA对蛋白质结构域进行搜索,对蛋白质进行标注。JAIMEI的意义:在这项工作中,我们提出了一个全面的转录组学和蛋白质组学分析的毒腺和毒的Tityus JAIMEI,一个最近在巴拿马和哥斯达黎加描述的医学相关的蝎子物种。值得注意的是,我们首次报道了在Tityus属蝎子毒液蛋白质组中属于核苷酸焦磷酸酶/磷酸二酯酶和结蛋白家族的蛋白质。此外,还鉴定了几个已知的蛇毒蛋白家族,包括透明质酸酶、电压门控钠和钾通道毒素、脂肪酶激活肽(LVPs)、富含半胱氨酸的分泌蛋白(CRISPs)、金属蛋白酶、肽酰甘氨酸-羟化单加氧酶(PHMs)、丝氨酸蛋白酶、α -淀粉酶、单胰岛素样生长因子结合域蛋白、非二硫桥接肽(NDBPs)、几丁质酶、环肽胰蛋白酶抑制剂、和钙蛋白样肽。在jaimei Tityus毒液中鉴定出16个不同的家族,为中美洲Tityus毒液的组成和多样性提供了新的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of proteomics
Journal of proteomics 生物-生化研究方法
CiteScore
7.10
自引率
3.00%
发文量
227
审稿时长
73 days
期刊介绍: Journal of Proteomics is aimed at protein scientists and analytical chemists in the field of proteomics, biomarker discovery, protein analytics, plant proteomics, microbial and animal proteomics, human studies, tissue imaging by mass spectrometry, non-conventional and non-model organism proteomics, and protein bioinformatics. The journal welcomes papers in new and upcoming areas such as metabolomics, genomics, systems biology, toxicogenomics, pharmacoproteomics. Journal of Proteomics unifies both fundamental scientists and clinicians, and includes translational research. Suggestions for reviews, webinars and thematic issues are welcome.
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