Whole-genome sequencing data of Salmonella enterica subsp. enterica serovar Enteritidis strain SSTRA25 isolated from a pediatric bacteremia case in Mosul, Iraq.

IF 1.4 Q3 MULTIDISCIPLINARY SCIENCES

Data in Brief Pub Date : 2025-09-17 eCollection Date: 2025-10-01 DOI:10.1016/j.dib.2025.112077

Shymaa F Yonis, Sura I Khudher, Talal S Salih, Rayan M Faisal, Ayman M Khaleel

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引用次数: 0

Abstract

Salmonella enterica subsp. enterica serovar Enteritidis is a well-known non-typhoidal serovar, commonly associated with foodborne illnesses. Here, we report the draft genome sequence of Salmonella enterica subsp. enterica serovar Enteritidis strain SSTRA25, isolated from a pediatric patient with bacteremia in Mosul, Iraq. The genome was sequenced using the Illumina NovaSeq 6000 platform. The assembled and annotated genome comprised 4733,231 bp with 40 contigs, and a GC content of 52.12%. It contains 4580 coding sequences (CDSs), 69 tRNAs, 9 rRNAs, 14 ncRNAs, 2 CRISPR arrays, and 368 annotated subsystems. The analysis of antimicrobial resistance genes revealed multiple genes associated with various drug classes, including phenicols, penicillin beta-lactams, cephalosporins, carbapenems, and monobactams, with perfect sequence matches. In addition, chromosomal point mutations linked to antimicrobial resistance were identified with significant sequence similarity. Salmonella enterica subsp. enterica serovar Enteritidis SSTRA25 showed a high predicted human pathogenicity score (0.941) and carried multiple virulence factors, including SspH2, SopA, SadA, ShdA, MisL, and several flagellar and outer membrane proteins. In the pathogenic landscape, the closest strain was Salmonella enterica subsp. enterica serovar Holcomb NY_FSL C7-1028, with a Minkowski distance of 0.024804. The genome sequence of Salmonella enterica subsp. enterica serovar Enteritidis SSTRA25 has been deposited in NCBI under the accession number JBNHMR000000000.

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肠炎沙门氏菌亚种全基因组测序数据。从伊拉克摩苏尔儿童菌血症病例中分离出的肠炎血清型菌株SSTRA25。

肠道沙门氏菌亚种肠炎是一种众所周知的非伤寒血清型，通常与食源性疾病有关。在此，我们报告了肠沙门氏菌亚种的基因组序列草图。从伊拉克摩苏尔一名菌血症患儿中分离出的肠炎血清型菌株SSTRA25。基因组测序采用Illumina NovaSeq 6000平台。经组装和注释的基因组全长4733,231 bp，共40个contigs， GC含量为52.12%。它包含4580个编码序列（CDSs）、69个trna、9个rnas、14个ncrna、2个CRISPR阵列和368个注释子系统。耐药基因分析显示，多基因与多类药物相关，包括酚类、青霉素-内酰胺类、头孢菌素类、碳青霉烯类和单奥巴坦类，序列匹配良好。此外，与抗菌素耐药性相关的染色体点突变被鉴定出具有显著的序列相似性。肠道沙门氏菌亚种小肠血清型肠炎菌SSTRA25具有较高的预测人致病性评分（0.941），携带多种毒力因子，包括SspH2、SopA、SadA、ShdA、MisL以及多种鞭毛和外膜蛋白。在致病性景观中，最接近的菌株是肠沙门氏菌亚种。肠道血清型Holcomb NY_FSL C7-1028，闵可夫斯基距离为0.024804。肠沙门氏菌亚种的基因组序列。enterica serovar Enteritidis SSTRA25已存入NCBI，注册号为JBNHMR000000000。

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来源期刊

Data in Brief MULTIDISCIPLINARY SCIENCES-

CiteScore

3.10

自引率

0.00%

发文量

996

审稿时长

70 days

期刊介绍： Data in Brief provides a way for researchers to easily share and reuse each other''s datasets by publishing data articles that: -Thoroughly describe your data, facilitating reproducibility. -Make your data, which is often buried in supplementary material, easier to find. -Increase traffic towards associated research articles and data, leading to more citations. -Open up doors for new collaborations. Because you never know what data will be useful to someone else, Data in Brief welcomes submissions that describe data from all research areas.