DFHD: dual-granularity fusion network using historical drugs for drug recommendation

IF 7.5 1区 计算机科学 Q1 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE
Kang An , Ming-Yu Lu , Yan-Kai Tian , Yi-Jia Zhang
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引用次数: 0

Abstract

Drug recommendation is a task in clinical medicine aimed at suggesting a set of safe and effective medications based on a patient’s electronic health records. Current approaches either rely on diagnoses and procedures documented in electronic health records to recommend drug combinations or focus on enhancing drug recommendation safety by considering drug-drug interactions. However, these approaches often overlook the significance of historical medication information in drug recommendation despite its strong correlation with current diagnostic and prescription recommendation. Therefore, we propose a Dual-granularity Fusion Network using Historical Drugs. Specifically, at the time-series modeling level, recurrent neural networks are used to extract time-series features from historical drug data to construct coarse-grained drug characterizations. At the molecular structure modeling level, a graph neural network is used to build a relationship map between drug molecular structures and drug substructures to capture the fine-grained interactions within drug molecules. In addition, we designed a historical drug molecule awareness module to capture historical drug information during drug molecule modeling so as to identify the drugs that really help to cure patients. To effectively integrate dual-granularity information, we design a dual-granularity fusion module to realize the synergistic learning of temporal and structural features. To ensure drug safety, we introduce the DDI loss function to adaptively adjust the loss weights based on the drug interaction risk results, taking into account the optimization goals of efficacy and safety. Our source code is available at https://github.com/AK-321/DFHD.
DFHD:使用历史药物进行药物推荐的双粒度融合网络
药物推荐是临床医学中的一项任务,旨在根据患者的电子健康记录建议一套安全有效的药物。目前的方法要么依靠电子健康记录中的诊断和程序来推荐药物组合,要么通过考虑药物-药物相互作用来提高推荐药物的安全性。然而,这些方法往往忽视了历史用药信息在药物推荐中的重要性,尽管它与当前诊断和处方推荐有很强的相关性。因此,我们提出了一种基于历史药物的双粒度融合网络。具体而言,在时间序列建模层面,利用递归神经网络从历史药物数据中提取时间序列特征,构建粗粒度药物表征。在分子结构建模层面,利用图神经网络构建药物分子结构与药物子结构之间的关系图,捕捉药物分子内部的细粒度相互作用。此外,我们设计了历史药物分子感知模块,在药物分子建模过程中捕捉历史药物信息,从而识别出真正有助于治愈患者的药物。为了有效地整合双粒度信息,我们设计了双粒度融合模块,实现了时间特征和结构特征的协同学习。为了保证药物安全性,我们引入DDI损失函数,根据药物相互作用风险结果自适应调整损失权重,同时兼顾疗效和安全性的优化目标。我们的源代码可从https://github.com/AK-321/DFHD获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Expert Systems with Applications
Expert Systems with Applications 工程技术-工程:电子与电气
CiteScore
13.80
自引率
10.60%
发文量
2045
审稿时长
8.7 months
期刊介绍: Expert Systems With Applications is an international journal dedicated to the exchange of information on expert and intelligent systems used globally in industry, government, and universities. The journal emphasizes original papers covering the design, development, testing, implementation, and management of these systems, offering practical guidelines. It spans various sectors such as finance, engineering, marketing, law, project management, information management, medicine, and more. The journal also welcomes papers on multi-agent systems, knowledge management, neural networks, knowledge discovery, data mining, and other related areas, excluding applications to military/defense systems.
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