Risk factor identification for delayed excretion in pediatric high-dose methotrexate therapy: a machine learning analysis of real-world data.

IF 4.8 2区 医学 Q1 PHARMACOLOGY & PHARMACY
Frontiers in Pharmacology Pub Date : 2025-09-17 eCollection Date: 2025-01-01 DOI:10.3389/fphar.2025.1662718
Chengyu Zhou, Yali Qian, Yao Xue, Liucheng Rong, Yu Wan, Kaiqiang Leng, Hongjun Miao, Feng Chen, Yongjun Fang, Xuhua Ge
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引用次数: 0

Abstract

Purpose: This study was to identify risk factors associated with delayed methotrexate (MTX) excretion in pediatric patients receiving high-dose MTX (HDMTX) therapy based on real-world data, and to develop and evaluate a predictive model.

Methods: Clinical data were retrospectively collected from 1,485 pediatric HDMTX chemotherapy cycles at the Children's Hospital affiliated with Nanjing Medical University between 2021 and 2023. Key predictive variables were identified by Least Absolute Shrinkage and Selection Operator (LASSO) regression, Random Forest (RF), and Support Vector Machine Recursive Feature Elimination (SVM-RFE), and then incorporated into predictive models for MTX delayed excretion using Logistic Regression (LR), Naive Bayes (NB), Support Vector Machine (SVM), and Extreme Gradient Boosting (XGBoost). Bootstrap was employed to internally validate these models and identify the best-performing one, and then SHapley Additive exPlanations (SHAP) values were utilized to provide both global and local interpretations.

Results: Among the 1,485 pediatric HDMTX chemotherapy cycles, 26.1% were associated with delayed MTX excretion. Serum creatinine (Scr), total drug dose (Dose), alkaline phosphatase (ALP), creatine kinase (CK), blood urea nitrogen (Urea), gamma-glutamyl transferase (GGT), hemoglobin (HB), and height were identified as key predictors of delayed excretion. Internal validation showed that the XGBoost model performed best, with an accuracy of 0.780, an F1 score of 0.669, an area under the Receiver Operating Characteristic curve (AUROC) of 0.842, and a Brier score of 0.136. Decision Curve Analysis (DCA) also demonstrated favorable clinical utility. SHAP analysis revealed that Scr was the most important risk factor for delayed MTX excretion in the XGBoost model. This XGBoost model has been translated into a convenient tool to facilitate its utility in clinical settings.

Conclusion: The XGBoost model demonstrated good predictive performance and clinical utility for delayed MTX excretion in pediatric patients.

儿童大剂量甲氨蝶呤治疗延迟排泄的危险因素识别:现实世界数据的机器学习分析。
目的:本研究旨在根据实际数据,确定接受高剂量甲氨蝶呤(HDMTX)治疗的儿科患者延迟甲氨蝶呤(MTX)排泄的相关危险因素,并建立和评估预测模型。方法:回顾性收集南京医科大学附属儿童医院2021 - 2023年间1485例儿童HDMTX化疗周期的临床资料。通过最小绝对收缩和选择算子(LASSO)回归、随机森林(RF)和支持向量机递归特征消除(SVM- rfe)识别关键预测变量,然后使用逻辑回归(LR)、朴素贝叶斯(NB)、支持向量机(SVM)和极端梯度增强(XGBoost)将其纳入MTX延迟排泄的预测模型。采用Bootstrap对这些模型进行内部验证并确定表现最佳的模型,然后利用SHapley加性解释(SHAP)值提供全局和局部解释。结果:在1485个儿童HDMTX化疗周期中,26.1%与MTX排泄延迟有关。血清肌酐(Scr)、总药物剂量(dose)、碱性磷酸酶(ALP)、肌酸激酶(CK)、血尿素氮(urea)、γ -谷氨酰转移酶(GGT)、血红蛋白(HB)和身高被确定为延迟排泄的关键预测因子。内部验证结果表明,XGBoost模型的准确率为0.780,F1评分为0.669,AUROC下面积为0.842,Brier评分为0.136。决策曲线分析(DCA)也显示了良好的临床应用。SHAP分析显示,在XGBoost模型中,Scr是延迟MTX排泄的最重要危险因素。这种XGBoost模型已经转化为一种方便的工具,以促进其在临床环境中的效用。结论:XGBoost模型对儿童MTX延迟排泄具有良好的预测性能和临床应用价值。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Frontiers in Pharmacology
Frontiers in Pharmacology PHARMACOLOGY & PHARMACY-
CiteScore
7.80
自引率
8.90%
发文量
5163
审稿时长
14 weeks
期刊介绍: Frontiers in Pharmacology is a leading journal in its field, publishing rigorously peer-reviewed research across disciplines, including basic and clinical pharmacology, medicinal chemistry, pharmacy and toxicology. Field Chief Editor Heike Wulff at UC Davis is supported by an outstanding Editorial Board of international researchers. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics, clinicians and the public worldwide.
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