{"title":"Segmentation for Learning Adsorption Patterns and Residence-Time Kinetics on Amorphous Surfaces.","authors":"Mattia Turchi,Ivan Lunati","doi":"10.1021/acs.jcim.5c01463","DOIUrl":null,"url":null,"abstract":"Heterogeneous surfaces such as amorphous silica are characterized by highly heterogeneous local atomic environments that govern the adsorption of gas molecules through spatial arrangements. These surfaces exhibit properties that are particularly relevant for adsorption and catalytic applications. Here, we investigate CO2 adsorption landscapes, captured by CO2 density maps, which display complex patterns requiring machine learning (ML) segmentation for systematic analysis. We present an optimized segmentation protocol based on a modified Random Forest (RF) classifier designed to control the morphology and spatial extent of the segmented regions via feature smoothing and standardized training parameters. While broadly applicable for specific modeling goals and properties of interest, here, the method is tailored to identify high-density regions that dominate heterogeneous adsorption dynamics. For these regions, we extract residence-time statistics that deviate from exponential behavior, revealing multiple time scales associated with distinct surface defects on amorphous surfaces. The extracted kinetics provide essential information for coarse-grained models of adsorption on disordered surfaces. Such models, parametrized using atomistic simulations, enable the prediction of macroscopically measurable adsorption and desorption rates, which can be directly compared with experiments also under conditions not limited by mass transfer.","PeriodicalId":44,"journal":{"name":"Journal of Chemical Information and Modeling ","volume":"27 1","pages":""},"PeriodicalIF":5.3000,"publicationDate":"2025-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Information and Modeling ","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jcim.5c01463","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MEDICINAL","Score":null,"Total":0}
引用次数: 0
Abstract
Heterogeneous surfaces such as amorphous silica are characterized by highly heterogeneous local atomic environments that govern the adsorption of gas molecules through spatial arrangements. These surfaces exhibit properties that are particularly relevant for adsorption and catalytic applications. Here, we investigate CO2 adsorption landscapes, captured by CO2 density maps, which display complex patterns requiring machine learning (ML) segmentation for systematic analysis. We present an optimized segmentation protocol based on a modified Random Forest (RF) classifier designed to control the morphology and spatial extent of the segmented regions via feature smoothing and standardized training parameters. While broadly applicable for specific modeling goals and properties of interest, here, the method is tailored to identify high-density regions that dominate heterogeneous adsorption dynamics. For these regions, we extract residence-time statistics that deviate from exponential behavior, revealing multiple time scales associated with distinct surface defects on amorphous surfaces. The extracted kinetics provide essential information for coarse-grained models of adsorption on disordered surfaces. Such models, parametrized using atomistic simulations, enable the prediction of macroscopically measurable adsorption and desorption rates, which can be directly compared with experiments also under conditions not limited by mass transfer.
期刊介绍:
The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery.
Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field.
As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.