Segmentation for Learning Adsorption Patterns and Residence-Time Kinetics on Amorphous Surfaces.

IF 5.3 2区 化学 Q1 CHEMISTRY, MEDICINAL
Mattia Turchi,Ivan Lunati
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引用次数: 0

Abstract

Heterogeneous surfaces such as amorphous silica are characterized by highly heterogeneous local atomic environments that govern the adsorption of gas molecules through spatial arrangements. These surfaces exhibit properties that are particularly relevant for adsorption and catalytic applications. Here, we investigate CO2 adsorption landscapes, captured by CO2 density maps, which display complex patterns requiring machine learning (ML) segmentation for systematic analysis. We present an optimized segmentation protocol based on a modified Random Forest (RF) classifier designed to control the morphology and spatial extent of the segmented regions via feature smoothing and standardized training parameters. While broadly applicable for specific modeling goals and properties of interest, here, the method is tailored to identify high-density regions that dominate heterogeneous adsorption dynamics. For these regions, we extract residence-time statistics that deviate from exponential behavior, revealing multiple time scales associated with distinct surface defects on amorphous surfaces. The extracted kinetics provide essential information for coarse-grained models of adsorption on disordered surfaces. Such models, parametrized using atomistic simulations, enable the prediction of macroscopically measurable adsorption and desorption rates, which can be directly compared with experiments also under conditions not limited by mass transfer.
学习非晶表面吸附模式和停留时间动力学的分割。
非均相表面,如非晶二氧化硅,其特点是高度非均相的局部原子环境,通过空间排列控制气体分子的吸附。这些表面表现出与吸附和催化应用特别相关的特性。在这里,我们研究了二氧化碳吸附景观,由二氧化碳密度图捕获,它显示了需要机器学习(ML)分割进行系统分析的复杂模式。我们提出了一种基于改进随机森林(RF)分类器的优化分割方案,该分类器旨在通过特征平滑和标准化训练参数来控制分割区域的形态和空间范围。虽然广泛适用于特定的建模目标和感兴趣的性质,但在这里,该方法专门用于识别主导非均相吸附动力学的高密度区域。对于这些区域,我们提取了偏离指数行为的停留时间统计数据,揭示了与非晶表面上不同表面缺陷相关的多个时间尺度。提取的动力学为无序表面上的粗粒度吸附模型提供了必要的信息。这些模型,使用原子模拟参数化,能够预测宏观可测量的吸附和解吸速率,可以直接与实验进行比较,也可以在不受传质限制的条件下进行比较。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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