High-throughput sequencing technologies for cancer genomics.

4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology
Methods in cell biology Pub Date : 2025-01-01 Epub Date: 2025-03-05 DOI:10.1016/bs.mcb.2025.02.018
Garima, Meenakshi Dhanawat, Kashish Wilson, Pramila Chaubey
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引用次数: 0

Abstract

In investigations about transcriptomics, epigenomics, and genomics, high-throughput sequencing technologies have become indispensable. Several hundred million of DNA molecules may be sequenced at once thanks to high throughput sequencing (HTS) technologies, which can simultaneously analyze many DNA molecules. Traditionally, sequencing information has been clarified utilizing a low throughput technique known as Sanger sequencing. This added value makes it feasible to employ HTS to generate tremendous amounts of data, which enhances the comprehension of the transcriptome and genetic fingerprints of cells during various stages of evolution and pathology. By identifying somatic changes, morphological deviations, and repetitive changes across the human genome, techniques such as whole exome sequencing (WES) and whole genome sequencing (WGS) provide information about cancer formation as well as prospective therapies. Identifying tumor biology and discovering biomarkers rely on the examination of aberrant networks and variations in gene expression that RNA DNA sequencing, or RNA-Seq, offers. By identifying rare cell kinds and their function in carcinogenesis, the sequencing of one cell offers illumination on the wide range of cells observed across tumors. Metagenomics and chromatin immunoprecipitation sequencing (ChIP-Seq) delivers essential knowledge by discovering alterations that affect the epigenetic configuration and the microenvironment that accompanies tumors. Integrating these recent developments will allow the development of personalized treatments that use unique genetic traits to determine every cancer patient, offering more individualized treatments. The revolutionary implications of high-throughput genome sequencing for cancer research and treatment are addressed in this book chapter, particularly concerning cancer precision as well as effective treatment outcomes.

癌症基因组学的高通量测序技术。
在转录组学、表观基因组学和基因组学的研究中,高通量测序技术已成为必不可少的技术。由于高通量测序(HTS)技术可以同时分析许多DNA分子,因此可以一次对数亿个DNA分子进行测序。传统上,测序信息已澄清利用低通量技术被称为桑格测序。这一附加价值使得利用HTS产生大量数据成为可能,从而增强了对细胞在不同进化和病理阶段的转录组和遗传指纹的理解。通过识别人类基因组中的体细胞变化、形态偏差和重复变化,全外显子组测序(WES)和全基因组测序(WGS)等技术提供了有关癌症形成和前瞻性治疗的信息。识别肿瘤生物学和发现生物标志物依赖于RNA- DNA测序或RNA- seq提供的异常网络和基因表达变化的检查。通过鉴定罕见的细胞种类及其在癌变过程中的功能,单个细胞的测序为在肿瘤中观察到的广泛细胞提供了启发。宏基因组学和染色质免疫沉淀测序(ChIP-Seq)通过发现影响表观遗传结构和伴随肿瘤的微环境的改变提供了必要的知识。整合这些最新的发展将允许个性化治疗的发展,利用独特的遗传特征来确定每个癌症患者,提供更多的个性化治疗。高通量基因组测序对癌症研究和治疗的革命性影响在这本书的章节中得到了解决,特别是关于癌症的精度以及有效的治疗结果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Methods in cell biology
Methods in cell biology 生物-细胞生物学
CiteScore
3.10
自引率
0.00%
发文量
125
审稿时长
3 months
期刊介绍: For over fifty years, Methods in Cell Biology has helped researchers answer the question "What method should I use to study this cell biology problem?" Edited by leaders in the field, each thematic volume provides proven, state-of-art techniques, along with relevant historical background and theory, to aid researchers in efficient design and effective implementation of experimental methodologies. Over its many years of publication, Methods in Cell Biology has built up a deep library of biological methods to study model developmental organisms, organelles and cell systems, as well as comprehensive coverage of microscopy and other analytical approaches.
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