Conformation of six-membered vanadium chelate rings

IF 3.2 2区 化学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Skyler A. Markham , Kendall E. Jenkins , Avery M. Gibson , Craig C. McLauchlan , Debbie C. Crans
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Abstract

Vanadium complexes have many desirable catalytic and biological properties across a wide variety of chelate types with coordination moieties typically being oxygen and nitrogen. In this work, we carried out a data mining analysis investigating the conformation of six-membered rings formed between a ligand and a vanadium atom with the objective to understand how much the ligand conformation impacted the structure and stability of the coordination complex. There are 104 structures with the NVN unit in the Cambridge Crystallographic Data Centre (CCDC), 28 structures with OVN unit, 386 structures with the OVO unit, and 11 structures with NVN(sp2)C(sp2) unit, with the remainder of the six-membered ring being three C atoms. The structures containing NVN, OVN, OVO, and NVN(sp2)C(sp2) units show chelate geometries including chair, twist-boat, boat, and half-chair. Out of the total 529 structures, there were 315 chairs (60 %), 91 twist-boats (17 %), 86 boats (16 %), 4 half-chairs (1 %), 2 planar (0.5 %), 13 complexes that contained more than one 6-membered ring and the complex having more than one chelate conformation (2.5 %), and 16 complexes where the structures are not deposited in the CCDC (3 %). Based on the analysis, there is a distinct correlation between the conformation of the ring and the composition of the chelate of the mononuclear, dinuclear and polyoxidovanadate complexes containing NVN, OVN, OVO and NVN(sp2)C(sp2) groups. Therefore, it appears that the chelate composition impacts the conformation of the six-membered ring and thus the stability of the complex.

Abstract Image

六元钒螯合环的构象。
钒配合物在各种螯合类型中具有许多理想的催化和生物学特性,配位基团通常是氧和氮。在这项工作中,我们进行了数据挖掘分析,研究了配体和钒原子之间形成的六元环的构象,目的是了解配体构象对配合物的结构和稳定性的影响程度。剑桥晶体数据中心(CCDC)有104个结构具有NVN单元,28个结构具有OVN单元,386个结构具有OVO单元,11个结构具有NVN(sp2)C(sp2)单元,其余六元环为3个C原子。含有NVN、OVN、OVO和NVN(sp2)C(sp2)单元的结构呈现出椅形、扭船形、船形和半椅形的螯合几何形状。在529种结构中,椅子型315种(60%),扭转船型91种(17%),船型86种(16%),半椅子型4种(1%),平面型2种(0.5%),含有1个以上6元环和具有1个以上螯合构象的配合物13种(2.5%),16种结构不沉积在CCDC中(3%)。分析表明,含NVN、OVN、OVO和NVN(sp2)C(sp2)基团的单核、双核和多氧化钒酸盐配合物的螯合物组成与环的构象有明显的相关性。因此,螯合物的组成影响了六元环的构象,从而影响了配合物的稳定性。
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来源期刊
Journal of Inorganic Biochemistry
Journal of Inorganic Biochemistry 生物-生化与分子生物学
CiteScore
7.00
自引率
10.30%
发文量
336
审稿时长
41 days
期刊介绍: The Journal of Inorganic Biochemistry is an established international forum for research in all aspects of Biological Inorganic Chemistry. Original papers of a high scientific level are published in the form of Articles (full length papers), Short Communications, Focused Reviews and Bioinorganic Methods. Topics include: the chemistry, structure and function of metalloenzymes; the interaction of inorganic ions and molecules with proteins and nucleic acids; the synthesis and properties of coordination complexes of biological interest including both structural and functional model systems; the function of metal- containing systems in the regulation of gene expression; the role of metals in medicine; the application of spectroscopic methods to determine the structure of metallobiomolecules; the preparation and characterization of metal-based biomaterials; and related systems. The emphasis of the Journal is on the structure and mechanism of action of metallobiomolecules.
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