Genetic correlations of environmental sensitivity based on daily feed intake perturbations with economically important traits in a male pig line

Abstract

Pigs in intensive production systems encounter various stressors that negatively impact their productivity and welfare. The primary aim of this study was to estimate the genetic correlations of the slope (indicator of sensitivity of the animals to environmental challenges) of the daily feed intake (DFI) across different environmental gradients (probability of the occurrence of a challenge on a given day) with growth, feed efficiency, carcass, and meat quality traits using a single-step reaction norm animal model (RNAM) in Piétrain pigs. In addition, genetic correlations of DFI (its total breeding value) with the same traits were also estimated. The probabilities of the occurrence of an unrecorded environmental challenge, inferred via a Gaussian mixture model, were taken as a reference and used in the genetic analysis as an environmental descriptor. Variance components were estimated via restricted maximum likelihood using the single-step genomic best linear unbiased prediction method, using a series of multivariate RNAM with two phenotypes (DFI and each of the traits of economic importance), with the probability of an unrecorded challenge on a given day included as an environmental descriptor for DFI only, because DFI is recorded daily but the other traits are not. Genetic correlations of the slope of DFI were 0.15 with age at 100 kg, 0.04 with backfat thickness, − 0.29 with loin muscle thickness, 0.05 with feed conversion ratio, − 0.07 with lean meat percentage, − 0.13 with pH of the ham at 24 h postmortem, 0.06 with drip loss percentage, and 0.15 with boneless ham weight. Complementary results showed that genetic correlations of DFI with other economic traits varied across the environmental gradients. Estimates of genetic correlations of DFI with other traits of economic importance varied across the environmental gradients, especially for growth rate, which suggests the presence of genotype-by-environment interactions. The slope of DFI is an indicator of sensitivity of the animals to environmental challenges. Most traits of economic importance exhibited weak genetic correlations with the slope of DFI, indicating that selection for resilience based on the environmental sensitivity (slope of DFI) can be performed without adversely affecting these other traits. Our results demonstrate the feasibility of improving resilience through genetic selection.