Denis Molchanov , Chaokai Zhang , Nan Lin , Songbai Ji , Zhangxian Yuan
{"title":"High-order mesoscale modeling with geometrically conforming gray/white matter interface for traumatic brain injury","authors":"Denis Molchanov , Chaokai Zhang , Nan Lin , Songbai Ji , Zhangxian Yuan","doi":"10.1016/j.cmpb.2025.109074","DOIUrl":null,"url":null,"abstract":"<div><h3>Background and Objective:</h3><div>Brain injury models with a supramillimeter resolution are not feasible to provide spatially detailed strains at or below millimeter scales, especially in regions of convoluted geometry such as at the gray/white matter interface. Furthermore, non-conforming mesh boundaries resulting from discretization errors can lead to inaccurate strain and stress distributions near interfaces, areas typically associated with elevated vulnerabilities in traumatic brain injury (TBI). Conventional approaches using extremely small linear elements are not effective to address the issue because of challenges in generating boundary-conforming meshes and slow convergence.</div></div><div><h3>Methods:</h3><div>In this study, we adapt the Non-Uniform Rational B-Splines (NURBS) and isogeometric analysis (IGA) to develop high-order mesoscale models that smoothly represent complex tissue boundaries with highly resolved strain distributions. We address key challenges for applications to the brain, including the construction of smooth tissue boundaries from voxelized image segmentation and overcoming numerical difficulties arising from near-incompressibility.</div></div><div><h3>Results:</h3><div>Compared to the conventional model using linear elements, the high-order mesoscale model demonstrates superior efficiency by achieving the same accuracy but with two orders of magnitude fewer degrees of freedom and at least one order of magnitude reduction in computational cost. Two-dimensional mesoscale models are constructed at gray/white matter interface to simulate realistic impact loading. The high-order mesoscale models discover strain concentration at the convoluted tissue boundary missing from the global model (e.g., up to 20% difference in magnitude). Notable differences in strain distribution also exist, with a normalized root mean squared error of up to 7.7% for strains sampled near the interface. These strain differences have major implications on downstream axonal injury model simulations.</div></div><div><h3>Conclusion:</h3><div>This study demonstrates the unique potential of leveraging IGA to develop mesoscale brain models with conforming tissue boundaries, and is important for filling a critical gap between global and cellular brain injury models in a multiscale modeling framework. The technique is general and scalable as it is applicable to diverse two- and three-dimensional biomechanical problems, including and beyond brain biomechanics.</div></div>","PeriodicalId":10624,"journal":{"name":"Computer methods and programs in biomedicine","volume":"272 ","pages":"Article 109074"},"PeriodicalIF":4.8000,"publicationDate":"2025-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer methods and programs in biomedicine","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0169260725004912","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
Background and Objective:
Brain injury models with a supramillimeter resolution are not feasible to provide spatially detailed strains at or below millimeter scales, especially in regions of convoluted geometry such as at the gray/white matter interface. Furthermore, non-conforming mesh boundaries resulting from discretization errors can lead to inaccurate strain and stress distributions near interfaces, areas typically associated with elevated vulnerabilities in traumatic brain injury (TBI). Conventional approaches using extremely small linear elements are not effective to address the issue because of challenges in generating boundary-conforming meshes and slow convergence.
Methods:
In this study, we adapt the Non-Uniform Rational B-Splines (NURBS) and isogeometric analysis (IGA) to develop high-order mesoscale models that smoothly represent complex tissue boundaries with highly resolved strain distributions. We address key challenges for applications to the brain, including the construction of smooth tissue boundaries from voxelized image segmentation and overcoming numerical difficulties arising from near-incompressibility.
Results:
Compared to the conventional model using linear elements, the high-order mesoscale model demonstrates superior efficiency by achieving the same accuracy but with two orders of magnitude fewer degrees of freedom and at least one order of magnitude reduction in computational cost. Two-dimensional mesoscale models are constructed at gray/white matter interface to simulate realistic impact loading. The high-order mesoscale models discover strain concentration at the convoluted tissue boundary missing from the global model (e.g., up to 20% difference in magnitude). Notable differences in strain distribution also exist, with a normalized root mean squared error of up to 7.7% for strains sampled near the interface. These strain differences have major implications on downstream axonal injury model simulations.
Conclusion:
This study demonstrates the unique potential of leveraging IGA to develop mesoscale brain models with conforming tissue boundaries, and is important for filling a critical gap between global and cellular brain injury models in a multiscale modeling framework. The technique is general and scalable as it is applicable to diverse two- and three-dimensional biomechanical problems, including and beyond brain biomechanics.
期刊介绍:
To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine.
Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.