{"title":"Unlocking the anticancer role of alpha-phellandrene via TRPM4 channel modulation in lung cancer","authors":"Akanksha Singh , Shristi Modanwal , Abha Meena , Nidhi Mishra","doi":"10.1016/j.compbiolchem.2025.108688","DOIUrl":null,"url":null,"abstract":"<div><div>Lung cancer remains one of the leading causes of death worldwide, and in major cases accounts for non-small cell lung cancer (NSCLC). Recent advances in targeted therapy have greatly improved treatment outcomes by concentrating on specific genes, proteins, and signaling pathways in tumors, providing a precise treatment method that causes less damage to healthy cells. In the context of targeted therapy, one more target biomarker has been identified, ion channels, which have been considered diverse regulators in the progression of lung cancer. Transient receptor potential (TRP) channels have captivated tremendous appreciation as promising drug targets over the past few years. Importantly, TRPM, a family of TRP that are key regulators of calcium homeostasis, have emerged as promising therapeutic targets due to their overexpression in various cancers, including lung cancer, as well as their involvement in tumor progression, metastasis, and apoptosis resistance. This study investigates the potential of naturally occurring monoterpenes as TRPM channel modulators using an <em>in silico</em> approach. Fifteen monoterpenes were selected and evaluated for their pharmacokinetic properties (ADMET), drug-likeness, and molecular docking study against TRPM2, TRPM4, TRPM5, TRPM7, and TRPM8 isoforms. Alpha-Phellandrene showed significant binding affinity toward TRPM4 (-6.0 kcal/mol) and notably shared key binding residues (ARG960, TYR964, GLU978, GLN976, PRO975, GLN973, LEU968) with the standard inhibitor 9-Phenanthrol, indicating its potential as a natural mimic. Molecular dynamics (MD) simulations further validated the structural stability of the TRPM4–alpha–phellandrene complex over 100 ns. Research findings suggested alpha-phellandrene as a promising candidate for developing TRPM4-targeted therapies in lung cancer.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"120 ","pages":"Article 108688"},"PeriodicalIF":3.1000,"publicationDate":"2025-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927125003494","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Lung cancer remains one of the leading causes of death worldwide, and in major cases accounts for non-small cell lung cancer (NSCLC). Recent advances in targeted therapy have greatly improved treatment outcomes by concentrating on specific genes, proteins, and signaling pathways in tumors, providing a precise treatment method that causes less damage to healthy cells. In the context of targeted therapy, one more target biomarker has been identified, ion channels, which have been considered diverse regulators in the progression of lung cancer. Transient receptor potential (TRP) channels have captivated tremendous appreciation as promising drug targets over the past few years. Importantly, TRPM, a family of TRP that are key regulators of calcium homeostasis, have emerged as promising therapeutic targets due to their overexpression in various cancers, including lung cancer, as well as their involvement in tumor progression, metastasis, and apoptosis resistance. This study investigates the potential of naturally occurring monoterpenes as TRPM channel modulators using an in silico approach. Fifteen monoterpenes were selected and evaluated for their pharmacokinetic properties (ADMET), drug-likeness, and molecular docking study against TRPM2, TRPM4, TRPM5, TRPM7, and TRPM8 isoforms. Alpha-Phellandrene showed significant binding affinity toward TRPM4 (-6.0 kcal/mol) and notably shared key binding residues (ARG960, TYR964, GLU978, GLN976, PRO975, GLN973, LEU968) with the standard inhibitor 9-Phenanthrol, indicating its potential as a natural mimic. Molecular dynamics (MD) simulations further validated the structural stability of the TRPM4–alpha–phellandrene complex over 100 ns. Research findings suggested alpha-phellandrene as a promising candidate for developing TRPM4-targeted therapies in lung cancer.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.