Comprehensive analysis and validation of angiogenesis in vascular dementia from the perspective of diagnosis, prevention, and treatment.

IF 2.8 3区 生物学 Q2 GENETICS & HEREDITY
Frontiers in Genetics Pub Date : 2025-09-08 eCollection Date: 2025-01-01 DOI:10.3389/fgene.2025.1646991
Lijun Xu, Yujiao Wang, Daojun Xie
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引用次数: 0

Abstract

Background: Angiogenesis is a critical pathological process in vascular dementia (VD), yet current therapeutic strategies targeting this mechanism remain limited. Identifying novel molecular pathways involved in angiogenesis holds significant promise for advancing both diagnostic and therapeutic approaches for VD.

Methods: We first applied weighted gene coexpression network analysis (WGCNA) and differentially expressed gene (DEG) analysis, combined with phenotypic gene database mining, to identify angiogenesis-associated genes in VD. We then used the Least Absolute Shrinkage and Selection Operator (LASSO) regression to select key diagnostic genes. The diagnostic efficacy of these genes was evaluated using receiver operating characteristic (ROC) curve analysis, while their association with immune cell infiltration was assessed via xCell immunoinfiltration. Using single-nucleus RNA sequencing (snRNA-seq), we determined the cellular distribution of key genes and applied Gene Set Enrichment Analysis (GSEA) to analyze functional pathways in the differentially expressed cell clusters. Finally, we validated gene expression changes in the hippocampus of bilateral common carotid artery occlusion (BCCAO)-induced VD rats using quantitative polymerase chain reaction (qPCR) and Western blot (WB).

Results: Ultimately, we screened five key genes, namely, CCL2, VEGFA, SPP1, ANGPT2, and ANGPTL4, which were all downregulated in the BCCAO model. The results of snRNA-seq showed that key genes were mainly clustered in microglia, endothelial cells, and astrocytes. Microglia, endothelial cells, and astrocytes play a key role in regulating angiogenesis.

Conclusion: These five key genes might be used as angiogenesis diagnostic genes for VD and might be novel potential targets for diagnosis, treatment, and prevention.

从诊断、预防和治疗的角度综合分析和验证血管性痴呆的血管生成。
背景:血管生成是血管性痴呆(VD)的一个关键病理过程,但目前针对这一机制的治疗策略仍然有限。确定血管生成的新分子途径对推进VD的诊断和治疗方法具有重要意义。方法:首先应用加权基因共表达网络分析(WGCNA)和差异表达基因(DEG)分析,结合表型基因数据库挖掘,鉴定VD中血管生成相关基因。然后我们使用最小绝对收缩和选择算子(LASSO)回归来选择关键的诊断基因。使用受试者工作特征(ROC)曲线分析评估这些基因的诊断效能,通过xCell免疫浸润评估它们与免疫细胞浸润的相关性。我们利用单核RNA测序(snRNA-seq)确定了关键基因的细胞分布,并应用基因集富集分析(GSEA)分析了差异表达细胞簇的功能途径。最后,我们利用定量聚合酶链反应(qPCR)和Western blot (WB)验证双侧颈总动脉闭塞(BCCAO)诱导的VD大鼠海马中基因表达的变化。结果:最终我们筛选出5个关键基因,分别是CCL2、VEGFA、SPP1、ANGPT2和ANGPTL4,它们在BCCAO模型中均下调。snRNA-seq结果显示,关键基因主要聚集在小胶质细胞、内皮细胞和星形胶质细胞中。小胶质细胞、内皮细胞和星形胶质细胞在调节血管生成中起关键作用。结论:这5个关键基因可作为VD的血管生成诊断基因,为VD的诊断、治疗和预防提供新的潜在靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Frontiers in Genetics
Frontiers in Genetics Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
5.50
自引率
8.10%
发文量
3491
审稿时长
14 weeks
期刊介绍: Frontiers in Genetics publishes rigorously peer-reviewed research on genes and genomes relating to all the domains of life, from humans to plants to livestock and other model organisms. Led by an outstanding Editorial Board of the world’s leading experts, this multidisciplinary, open-access journal is at the forefront of communicating cutting-edge research to researchers, academics, clinicians, policy makers and the public. The study of inheritance and the impact of the genome on various biological processes is well documented. However, the majority of discoveries are still to come. A new era is seeing major developments in the function and variability of the genome, the use of genetic and genomic tools and the analysis of the genetic basis of various biological phenomena.
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