SuperFormer: Unet-Like Super Token Transformer for Medical Image Segmentation

IF 2.5 4区 计算机科学 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC
Wenshuai Zhang, Lei Wang, Pengcheng Dai, Zhiyao Liu, Juan Wang, Qun Liu
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引用次数: 0

Abstract

The application of computer-aided diagnosis in the medical field is gradually becoming widespread. Multi-organ segmentation in clinical abdominal CT images and cardiac MRI images poses a challenging task. Accurate segmentation of multiple organs is a crucial prerequisite for disease diagnosis and treatment planning. In this paper, we introduce a multi-organ segmentation method based on CT or MRI images: SuperFormer.SuperFormer is a hierarchical encoder-decoder network with two compelling designs: (1) It introduces the super token transformer block into the U-shaped encoder-decoder structure, making it easier to extract global information while significantly improving computational efficiency. (2) It presents a channel-based multi-scale Transformer context bridge for effectively extracting correlations of global dependencies and local context in multi-scale features generated by our hierarchical Transformer encoder. This guides the efficient connection of fused multi-scale channel information to decoder features, eliminating the semantic gap. In medical image segmentation, SuperFormer demonstrates a powerful ability to capture more discriminative dependencies and context. Experimental results on multi-organ segmentation and cardiac segmentation tasks demonstrate the algorithm's superiority, effectiveness, and robustness. Specifically, experimental results from training SuperFormer from scratch even surpass state-of-the-art methods pretrained on ImageNet, and its core design can be extended to other visual segmentation tasks.

SuperFormer:用于医学图像分割的类似unet的超级令牌转换器
计算机辅助诊断在医疗领域的应用日益广泛。临床腹部CT图像和心脏MRI图像的多器官分割是一项具有挑战性的任务。多器官的准确分割是疾病诊断和治疗计划的重要前提。本文介绍了一种基于CT或MRI图像的多器官分割方法:SuperFormer。SuperFormer是一种分层编码器-解码器网络,有两个引人注目的设计:(1)在u型编码器-解码器结构中引入了超级令牌转换块,使其更容易提取全局信息,同时显著提高了计算效率。(2)提出了一种基于通道的多尺度Transformer上下文桥,用于有效提取分层Transformer编码器生成的多尺度特征中的全局依赖关系和局部上下文的相关性。这引导了融合的多尺度信道信息与解码器特征的有效连接,消除了语义差距。在医学图像分割中,SuperFormer展示了捕获更多判别依赖关系和上下文的强大能力。在多器官分割和心脏分割任务上的实验结果证明了该算法的优越性、有效性和鲁棒性。具体来说,从头开始训练SuperFormer的实验结果甚至超过了在ImageNet上预训练的最先进的方法,其核心设计可以扩展到其他视觉分割任务。
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来源期刊
International Journal of Imaging Systems and Technology
International Journal of Imaging Systems and Technology 工程技术-成像科学与照相技术
CiteScore
6.90
自引率
6.10%
发文量
138
审稿时长
3 months
期刊介绍: The International Journal of Imaging Systems and Technology (IMA) is a forum for the exchange of ideas and results relevant to imaging systems, including imaging physics and informatics. The journal covers all imaging modalities in humans and animals. IMA accepts technically sound and scientifically rigorous research in the interdisciplinary field of imaging, including relevant algorithmic research and hardware and software development, and their applications relevant to medical research. The journal provides a platform to publish original research in structural and functional imaging. The journal is also open to imaging studies of the human body and on animals that describe novel diagnostic imaging and analyses methods. Technical, theoretical, and clinical research in both normal and clinical populations is encouraged. Submissions describing methods, software, databases, replication studies as well as negative results are also considered. The scope of the journal includes, but is not limited to, the following in the context of biomedical research: Imaging and neuro-imaging modalities: structural MRI, functional MRI, PET, SPECT, CT, ultrasound, EEG, MEG, NIRS etc.; Neuromodulation and brain stimulation techniques such as TMS and tDCS; Software and hardware for imaging, especially related to human and animal health; Image segmentation in normal and clinical populations; Pattern analysis and classification using machine learning techniques; Computational modeling and analysis; Brain connectivity and connectomics; Systems-level characterization of brain function; Neural networks and neurorobotics; Computer vision, based on human/animal physiology; Brain-computer interface (BCI) technology; Big data, databasing and data mining.
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