{"title":"The role of protonation and solvation in modulating the electronic structure in α- and β-D-glucosamine: A density functional theory study","authors":"Rodolfo Daniel Ávila-Avilés","doi":"10.1016/j.jmgm.2025.109175","DOIUrl":null,"url":null,"abstract":"<div><div>Glucosamine is a biologically relevant amino sugar that plays a key role in glycoproteins and polysaccharides such as chitin and chitosan. Despite its importance, a detailed quantum-level understanding of the electronic and conformational behavior of its α- and β-anomers under varying protonation and hydration conditions remains limited. Herein, we present a comprehensive DFT study at the B3LYP/6-31+G(d,p) level, modeling α- and β-D-glucosamine in both neutral and protonated forms with explicit hydration (1–5 water molecules). Our results show that neutral β-glucosamine is energetically more stable than its α-counterpart by 0.61 kcal/mol, consistent with its predominance in aqueous solution. Protonation induces significant electronic redistribution, with the LUMO localizing around the NH<sub>3</sub><sup>+</sup> group and the HOMO shifting away from it. This leads to a marked increase in the HOMO–LUMO energy gap, from 6.37 kcal/mol (neutral α-form) to a maximum of 7.32 kcal/mol (protonated β-form with 4H<sub>2</sub>O), indicating enhanced electronic stability and decreased reactivity. Explicit solvation stabilizes key hydrogen bond networks, with H-bond lengths as short as 1.51 Å in protonated systems. These findings offer new insight into how solvation and protonation shape the electronic landscape of glucosamine, with implications for its behavior in biological systems, material design, and protonation-dependent reactivity. The novelty of this study lies in combining explicit microsolvation with frontier orbital and MEP analysis across protonation states of both anomers—a previously unexplored approach.</div></div>","PeriodicalId":16361,"journal":{"name":"Journal of molecular graphics & modelling","volume":"142 ","pages":"Article 109175"},"PeriodicalIF":3.0000,"publicationDate":"2025-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of molecular graphics & modelling","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1093326325002359","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Glucosamine is a biologically relevant amino sugar that plays a key role in glycoproteins and polysaccharides such as chitin and chitosan. Despite its importance, a detailed quantum-level understanding of the electronic and conformational behavior of its α- and β-anomers under varying protonation and hydration conditions remains limited. Herein, we present a comprehensive DFT study at the B3LYP/6-31+G(d,p) level, modeling α- and β-D-glucosamine in both neutral and protonated forms with explicit hydration (1–5 water molecules). Our results show that neutral β-glucosamine is energetically more stable than its α-counterpart by 0.61 kcal/mol, consistent with its predominance in aqueous solution. Protonation induces significant electronic redistribution, with the LUMO localizing around the NH3+ group and the HOMO shifting away from it. This leads to a marked increase in the HOMO–LUMO energy gap, from 6.37 kcal/mol (neutral α-form) to a maximum of 7.32 kcal/mol (protonated β-form with 4H2O), indicating enhanced electronic stability and decreased reactivity. Explicit solvation stabilizes key hydrogen bond networks, with H-bond lengths as short as 1.51 Å in protonated systems. These findings offer new insight into how solvation and protonation shape the electronic landscape of glucosamine, with implications for its behavior in biological systems, material design, and protonation-dependent reactivity. The novelty of this study lies in combining explicit microsolvation with frontier orbital and MEP analysis across protonation states of both anomers—a previously unexplored approach.
期刊介绍:
The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design.
As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.