The study investigated the effect of varying blending ratios of bioprocessed flours on phenolic composition, functional groups, in vitro inhibition of starch and lipid hydrolyzing enzymes, antioxidant capacity, and techno-functional properties. Raw, fermented, and germinated flours were obtained from whole-grain cowpeas, sorghum, and orange-fleshed sweet potatoes. The bioprocessed flours were blended by substituting 50% of germinated cowpea flour (GCF) with fermented sorghum (FSF) and sweet potato (FSP) flours at 10%, 20%, 25%, 30%, and 40% (w/w). An equal percentage of the bioprocessed flours (33.3% GCF:33.3% FSF:33.3% FSP, w/w) was also evaluated. Blends containing increasing levels of fermented sweet potato (10%–40%) exhibited elevated total flavonoid content (2.39–4.12 mg QE/g), total phenolic content (31–42.8 mg GAE/g), and targeted phenolic acids, including caffeic (1110–2380 µg/g), gallic (188–1820 µg/g), and vanillic (617–3480 µg/g). The 40% FSP blend showed shifted and stronger absorption peaks indicative of structural changes, with corresponding transmittance values of 47% at 1050 cm−1 (C–H in-plane and C–O stretch), 84% at 1240 cm−1 (C–C vibration), and 79% at 1400 cm−1 (OH bend). Parallel plot analysis revealed that the composite containing 50% germinated cowpea, 40% fermented FSP, and 10% FSFs had the highest apigenin and vanillic acid concentrations, along with high antioxidant capacity (50.7%) and enzyme inhibition activity against α-glucosidase (82.1%), α-amylase (32.8%), and pancreatic lipase (61.6%) compared to the individual bioprocessed flours. The same blend also showed improved solubility, better flour particle flowability, and decreased peak temperature. Overall, incorporating 40% fermented sweet potato into composite bioprocessed flours may promote synergistic enhancement of bioactive and techno-functional properties.