Tikhonov–Fenichel reductions and their application to a novel modelling approach for mutualism

IF 1.3 4区 生物学 Q4 ECOLOGY
Johannes Apelt, Volkmar Liebscher
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引用次数: 0

Abstract

When formulating a model there is a trade-off between model complexity and (biological) realism. In the present paper we demonstrate how model reduction from a precise mechanistic “super model” to simpler conceptual models using Tikhonov–Fenichel reductions, an algebraic approach to singular perturbation theory, can mitigate this problem. Compared to traditional methods for time scale separations (Tikhonov’s theorem, quasi-steady state assumption), Tikhonov–Fenichel reductions have the advantage that we can compute a reduction directly for a separation of rates into slow and fast ones instead of a separation of components of the system. Moreover, we can find all such reductions algorithmically.
In this work we use Tikhonov–Fenichel reductions to analyse a mutualism model tailored towards lichens with an explicit description of the interaction. We find: (1) the implicit description of the interaction given in the reductions by interaction terms (functional responses) varies depending on the scenario, (2) there is a tendency for the mycobiont, an obligate mutualist, to always benefit from the interaction while it can be detrimental for the photobiont, a facultative mutualist, depending on the parameters, (3) our model is capable of describing the shift from mutualism to parasitism, (4) via numerical analyis, that our model experiences bistability with multiple stable fixed points in the interior of the first orthant. To analyse the reductions we formalize and discuss a mathematical criterion that categorizes two-species interactions. Throughout the paper we focus on the relation between the mathematics behind Tikhonov–Fenichel reductions and their biological interpretation.
Tikhonov-Fenichel约简及其在互惠共生新建模方法中的应用。
在制定模型时,需要在模型复杂性和(生物)现实性之间进行权衡。在本文中,我们展示了如何使用奇异微扰理论的代数方法Tikhonov-Fenichel约简,从一个精确的机械“超级模型”到更简单的概念模型,可以缓解这个问题。与传统的时间尺度分离方法(Tikhonov定理,准稳态假设)相比,Tikhonov- fenichel约简的优点是,我们可以直接计算速率分离为慢速和快速的约简,而不是系统组件的分离。此外,我们可以通过算法找到所有这些约简。在本文中,我们使用Tikhonov-Fenichel约简来分析一个针对地衣的互惠模式,并明确描述了这种相互作用。我们发现:(1)通过相互作用项(功能响应)在减少中给出的相互作用的隐式描述因情景而异;(2)根据参数,真菌生物(义务互惠者)总是从相互作用中受益,而光生物(兼性互惠者)则可能有害;(3)我们的模型能够描述从互惠到寄生的转变;(4)通过数值分析。我们的模型具有双稳定性,在第一正交内具有多个稳定不动点。为了分析约简,我们形式化并讨论了对两种相互作用进行分类的数学标准。在整个论文中,我们关注的是吉洪诺夫-菲尼切尔约化背后的数学与它们的生物学解释之间的关系。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Theoretical Population Biology
Theoretical Population Biology 生物-进化生物学
CiteScore
2.50
自引率
14.30%
发文量
43
审稿时长
6-12 weeks
期刊介绍: An interdisciplinary journal, Theoretical Population Biology presents articles on theoretical aspects of the biology of populations, particularly in the areas of demography, ecology, epidemiology, evolution, and genetics. Emphasis is on the development of mathematical theory and models that enhance the understanding of biological phenomena. Articles highlight the motivation and significance of the work for advancing progress in biology, relying on a substantial mathematical effort to obtain biological insight. The journal also presents empirical results and computational and statistical methods directly impinging on theoretical problems in population biology.
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