MAGdb: a comprehensive high quality MAGs repository for exploring microbial metagenome-assemble genomes

IF 10.1 1区生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY

Genome Biology Pub Date : 2025-09-10 DOI:10.1186/s13059-025-03711-6

Guo Ye, Hao Hong, Ting Li, Jin Li, Jia-Qi Wu, Shuai Jiang, Zhi-Tong Meng, He-Tian Yuan, Wen Xue, Ai-Ling Li, Tao Zhou, Ting-Ting Li, Tao Li

引用次数: 0

Abstract

Metagenomic analyses of microbial communities have unveiled a substantial level of interspecies and intraspecies genetic diversity by reconstructing metagenome-assembled genomes (MAGs). The MAG database (MAGdb) boasts an impressive collection of 74 representative research papers, spanning clinical, environmental, and animal categories and comprising 13,702 paired-end run accessions of metagenomic sequencing and 99,672 high quality MAGs with manually curated metadata. MAGdb provides a user-friendly interface that users can browse, search, and download MAGs and their corresponding metadata information. It represents a valuable resource for researchers in discovering potential novel microbial lineages and understanding their ecological roles. MAGdb is publicly available at https://magdb.nanhulab.ac.cn/ .

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MAGdb：用于探索微生物宏基因组组装基因组的综合高质量MAGs存储库

微生物群落的宏基因组分析通过重建宏基因组组装基因组（MAGs）揭示了种间和种内的大量遗传多样性。MAG数据库（MAGdb）拥有令人印象深刻的74篇代表性研究论文，涵盖临床，环境和动物类别，包括13,702对元基因组测序的末端运行接入和99,672高质量的MAG，具有手动管理的元数据。MAGdb提供了一个用户友好的界面，用户可以浏览、搜索和下载MAGs及其相应的元数据信息。它为研究人员发现潜在的新微生物谱系和了解它们的生态作用提供了宝贵的资源。MAGdb可在https://magdb.nanhulab.ac.cn/上公开获取。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Genome Biology Biochemistry, Genetics and Molecular Biology-Genetics

CiteScore

21.00

自引率

3.30%

发文量

241

审稿时长

2 months

期刊介绍： Genome Biology stands as a premier platform for exceptional research across all domains of biology and biomedicine, explored through a genomic and post-genomic lens. With an impressive impact factor of 12.3 (2022),* the journal secures its position as the 3rd-ranked research journal in the Genetics and Heredity category and the 2nd-ranked research journal in the Biotechnology and Applied Microbiology category by Thomson Reuters. Notably, Genome Biology holds the distinction of being the highest-ranked open-access journal in this category. Our dedicated team of highly trained in-house Editors collaborates closely with our esteemed Editorial Board of international experts, ensuring the journal remains on the forefront of scientific advances and community standards. Regular engagement with researchers at conferences and institute visits underscores our commitment to staying abreast of the latest developments in the field.