Introducing the Sinclair Nanopig™ model: Preliminary genomic, proteomic, and hepatic CYP450 characterization for (bio)pharmaceutical safety assessment

IF 1.8 4区 医学 Q4 PHARMACOLOGY & PHARMACY
Yafei Chen , Nathan Bivens , Hong An , Brian Mooney , Thao Nguyen , Lyndon Coghill , Jennifer Horkman , Lois Haupt , Melissa Evans , Rebecca Campbell , Wendell Davis
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引用次数: 0

Abstract

The Nanopig™ model is an emerging non-rodent platform for (bio)pharmaceutical safety assessment, with potential advantages for translational research. Here, we report initial characterization results using whole genome sequencing (WGS) and tissue-based proteomics, focusing on drug metabolism and immune system relevance. WGS produced a high-quality Nanopig™ genome assembly (2.8–2.9 Gb), with >98 % alignment to the Duroc pig reference genome, and identified key metabolic and immune-related genes, including 47 cytochrome P450 (CYP450) genes with high homology to human CYP450 families. Proteomic profiling of 15 pharmaceutically relevant tissues revealed human orthologous drug metabolism enzymes and transporters (DMETs), as well as immune-related proteins, indicating similarities to human CYP450 enzyme abundance and tissue distribution. Functional evaluation of hepatic CYP450 activity yielded kinetic parameters (Km, Vmax) in the range observed in humans and beagle dogs. These early findings represent a foundational multi-omics dataset for the Nanopig™, suggesting its future use as a translational model in preclinical safety assessment. This work provides an early framework for species selection strategies and model optimization, with the long-term goal of reducing reliance on traditional non-rodent species in drug development.
介绍Sinclair Nanopig™模型:用于(生物)药物安全性评估的初步基因组学,蛋白质组学和肝脏CYP450表征
Nanopig™模型是一种新兴的(生物)药物安全性评估的非啮齿动物平台,具有转化研究的潜在优势。在这里,我们报告了使用全基因组测序(WGS)和基于组织的蛋白质组学的初步表征结果,重点关注药物代谢和免疫系统相关性。WGS生产了高质量的Nanopig™基因组组装(2.8-2.9 Gb),与杜洛克猪参考基因组有98%的一致性,并鉴定了关键的代谢和免疫相关基因,包括47个与人类CYP450家族高度同源的细胞色素P450 (CYP450)基因。15个药学相关组织的蛋白质组学分析揭示了人类同源药物代谢酶和转运蛋白(DMETs)以及免疫相关蛋白,表明与人类CYP450酶丰度和组织分布相似。肝脏CYP450活性的功能评估得到的动力学参数(Km, Vmax)在人类和比格犬观察到的范围内。这些早期发现代表了Nanopig™的基础多组学数据集,表明其未来可作为临床前安全性评估的转化模型。这项工作为物种选择策略和模型优化提供了一个早期框架,其长期目标是在药物开发中减少对传统非啮齿动物物种的依赖。
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来源期刊
Journal of pharmacological and toxicological methods
Journal of pharmacological and toxicological methods PHARMACOLOGY & PHARMACY-TOXICOLOGY
CiteScore
3.60
自引率
10.50%
发文量
56
审稿时长
26 days
期刊介绍: Journal of Pharmacological and Toxicological Methods publishes original articles on current methods of investigation used in pharmacology and toxicology. Pharmacology and toxicology are defined in the broadest sense, referring to actions of drugs and chemicals on all living systems. With its international editorial board and noted contributors, Journal of Pharmacological and Toxicological Methods is the leading journal devoted exclusively to experimental procedures used by pharmacologists and toxicologists.
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