Structural, electronic, and thermodynamic characterization with spectroscopic, topological, reactivity, and molecular docking studies of diallyl sulfide
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引用次数: 0
Abstract
The bioactive organosulfur compound diallyl sulfide (DAS), found in garlic and onions, was analyzed using density functional theory (DFT). DAS exhibits antimicrobial and anticancer properties, making it a potential candidate for drug discovery. Geometry optimization revealed bond lengths and angles consistent with electron delocalization. Frontier molecular orbital analysis showed increased HOMO–LUMO gaps and stability in polar solvents. Natural bond orbital analysis confirmed significant charge delocalization via sulfur-centered interactions, explaining the partial S–C double-bond character and weakened adjacent CH bonds, thus supporting electrophilicity trends. Thermodynamic properties displayed temperature-dependent changes, while UV–Vis spectra showed reduced in polar solvents owing to excited-state destabilization. The density of states indicates the excess electron density near the conduction band. The reduced density gradient plots identified the stabilizing van der Waals interactions. Molecular electrostatic potential mapping of electrophilic (sulfur) and nucleophilic (allyl H) sites was validated by Fukui function analysis. Druglikeness evaluation indicated that DAS satisfies Lipinski’s and Veber’s rules for oral bioavailability, but requires structural refinement to enhance complexity. Molecular docking with proteins 3IAI, 3E4E, and 4EY7 revealed hydrophobic and –sulfur interactions, confirming their biological relevance.
期刊介绍:
The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design.
As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.