Effect of L110M Mutation on the Structure and Stability of ATTR(105-115) Peptide Assembly: A Computational Study.

Abstract

The mechanisms driving amyloid assembly have long intrigued structural biologists, as they offer insights into systemic fibrotic changes and the dynamic behavior of transthyretin (TTR) aggregation, crucial for developing amyloid-targeted therapies. In TTR-associated amyloidosis, amyloid fibrils form via destabilization of the tetramer into dimers and monomers. While many TTR mutations have been studied, the atomistic impact of multiple mutations on amyloid transthyretin (ATTR) self-assembly remains underexplored. To the best of our knowledge, this is the first computational analysis reporting the impact of the L110M mutation on ATTR peptide aggregation. Using triplicate 1 μs all-atom molecular dynamics (MD) simulations, totaling 18 μs, the conformational dynamics of cross-β amyloid fibrils in the ATTR(105-115) segment were examined for both wild-type and L110M mutant TTR. The L110M mutation consistently enhanced the β-sheet content in all oligomers, with increases of ~1%, ~5%, and ~4% over the wild-type in the 2-, 4-, and 8-peptide systems, respectively. Molecular mechanics Poisson-Boltzmann surface area (MM-PBSA) calculations revealed higher effective binding free energy for the L110M mutant, with residue M110 contributing significantly to stabilization. These results suggest that L110M modestly enhances conformational order and stability in the TTR peptide assemblies without major structural disruption, deepening our understanding of amyloidogenesis in TTR-related disorders.