The Evolving Landscape of Amyloid Research.

IF 2.8 4区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Bernardo Bonilauri
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引用次数: 0

Abstract

The exponential growth of biomedical and life sciences literature, including research on amyloid biology, has made it increasingly challenging to track new discoveries and gain a comprehensive understanding of the evolution of specific research fields. Advances in natural language models (NLM) and artificial intelligence (AI) approaches now enable large-scale analysis of scientific publications, uncovering hidden patterns and facilitating data-driven insights. Here, a two-dimensional mapping of the global amyloid research landscape is presented, using the transformer-based large language model PubMedBERT, in combination with t-SNE and Latent Dirichlet Allocation (LDA), to analyze more than 140 000 abstracts from the PubMed database. This analysis provides a comprehensive visualization of the amyloid field, capturing key trends such as the historical progression of amyloid research, the emergence of dominant subfields, the distribution of contributing authors and their respective countries, and the identification of latent research topics over time, including chemicals and small molecules. By integrating AI-driven text analysis with large-scale bibliometric data, this study offers a novel perspective on the evolution of amyloid research, facilitating a deeper interdisciplinary understanding. This work serves as a valuable interactive resource for researchers while highlighting the potential of machine learning-driven literature mapping in identifying knowledge gaps and guiding future investigations.

淀粉样蛋白研究的发展前景。
生物医学和生命科学文献的指数增长,包括淀粉样蛋白生物学的研究,使得追踪新发现和全面了解特定研究领域的发展变得越来越具有挑战性。自然语言模型(NLM)和人工智能(AI)方法的进步现在可以对科学出版物进行大规模分析,发现隐藏的模式并促进数据驱动的见解。本文利用基于转换器的大型语言模型PubMedBERT,结合t-SNE和潜狄利克莱分配(Latent Dirichlet Allocation, LDA),对PubMed数据库中的14万多篇摘要进行了分析,绘制了全球淀粉样蛋白研究格局的二维地图。该分析提供了淀粉样蛋白领域的全面可视化,捕捉关键趋势,如淀粉样蛋白研究的历史进展,主要子领域的出现,贡献作者及其各自国家的分布,以及随着时间的推移确定潜在的研究主题,包括化学物质和小分子。通过将人工智能驱动的文本分析与大规模文献计量数据相结合,本研究为淀粉样蛋白研究的演变提供了一个新的视角,促进了更深层次的跨学科理解。这项工作为研究人员提供了宝贵的互动资源,同时强调了机器学习驱动的文献映射在识别知识差距和指导未来调查方面的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Proteins-Structure Function and Bioinformatics
Proteins-Structure Function and Bioinformatics 生物-生化与分子生物学
CiteScore
5.90
自引率
3.40%
发文量
172
审稿时长
3 months
期刊介绍: PROTEINS : Structure, Function, and Bioinformatics publishes original reports of significant experimental and analytic research in all areas of protein research: structure, function, computation, genetics, and design. The journal encourages reports that present new experimental or computational approaches for interpreting and understanding data from biophysical chemistry, structural studies of proteins and macromolecular assemblies, alterations of protein structure and function engineered through techniques of molecular biology and genetics, functional analyses under physiologic conditions, as well as the interactions of proteins with receptors, nucleic acids, or other specific ligands or substrates. Research in protein and peptide biochemistry directed toward synthesizing or characterizing molecules that simulate aspects of the activity of proteins, or that act as inhibitors of protein function, is also within the scope of PROTEINS. In addition to full-length reports, short communications (usually not more than 4 printed pages) and prediction reports are welcome. Reviews are typically by invitation; authors are encouraged to submit proposed topics for consideration.
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