{"title":"A simple guide to the use of Student's t-test, Mann-Whitney U test, Chi-squared test, and Kruskal-Wallis test in biostatistics.","authors":"Davide Chicco, Andrea Sichenze, Giuseppe Jurman","doi":"10.1186/s13040-025-00465-6","DOIUrl":null,"url":null,"abstract":"<p><p>In an age when machine learning and artificial intelligence are broadly employed, traditional statistics can still provide insightful information and results quickly and at a low computational cost. Statistics, in fact, offers many useful tools to researchers, including a series of univariate statistical tests that can identify relationships between pairs of numeric samples: Student's t-test, Mann-Whitney U test, Chi-squared test, and Kruskal-Wallis test. These tests generate several outcomes, including probability values (p-values) that can express a numerical quantity which accepts or rejects the null hypothesis, based on a certain threshold used. Although effective, these tests are often misused or employed in the wrong contexts, especially among biostatistics studies. Many scientific researchers do not seem to know how to choose one test over the others, and this misuse can lead to incorrect results and wrong conclusions. Here we present a simple theoretical and practical guide to the use of these four tests, first describing their theoretical properties and then displaying the results obtained by applying these tests to real-world medical datasets. Eventually, we explain when and how to use each test based on the data types of the samples considered. Our study can have a strong impact on scientific research by potentially influencing future studies involving these tests. Our recommendations, in turn, can help researchers produce more reliable and sound scientific results, thus increasing the quality of multiple scientific studies across various fields.</p>","PeriodicalId":48947,"journal":{"name":"Biodata Mining","volume":"18 1","pages":"56"},"PeriodicalIF":6.1000,"publicationDate":"2025-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12366075/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biodata Mining","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1186/s13040-025-00465-6","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
In an age when machine learning and artificial intelligence are broadly employed, traditional statistics can still provide insightful information and results quickly and at a low computational cost. Statistics, in fact, offers many useful tools to researchers, including a series of univariate statistical tests that can identify relationships between pairs of numeric samples: Student's t-test, Mann-Whitney U test, Chi-squared test, and Kruskal-Wallis test. These tests generate several outcomes, including probability values (p-values) that can express a numerical quantity which accepts or rejects the null hypothesis, based on a certain threshold used. Although effective, these tests are often misused or employed in the wrong contexts, especially among biostatistics studies. Many scientific researchers do not seem to know how to choose one test over the others, and this misuse can lead to incorrect results and wrong conclusions. Here we present a simple theoretical and practical guide to the use of these four tests, first describing their theoretical properties and then displaying the results obtained by applying these tests to real-world medical datasets. Eventually, we explain when and how to use each test based on the data types of the samples considered. Our study can have a strong impact on scientific research by potentially influencing future studies involving these tests. Our recommendations, in turn, can help researchers produce more reliable and sound scientific results, thus increasing the quality of multiple scientific studies across various fields.
期刊介绍:
BioData Mining is an open access, open peer-reviewed journal encompassing research on all aspects of data mining applied to high-dimensional biological and biomedical data, focusing on computational aspects of knowledge discovery from large-scale genetic, transcriptomic, genomic, proteomic, and metabolomic data.
Topical areas include, but are not limited to:
-Development, evaluation, and application of novel data mining and machine learning algorithms.
-Adaptation, evaluation, and application of traditional data mining and machine learning algorithms.
-Open-source software for the application of data mining and machine learning algorithms.
-Design, development and integration of databases, software and web services for the storage, management, retrieval, and analysis of data from large scale studies.
-Pre-processing, post-processing, modeling, and interpretation of data mining and machine learning results for biological interpretation and knowledge discovery.