Turning Waste Into Insight: A Novel Proteomic Approach to Non-Invasive Wound Biomarker Discovery.

IF 5.5 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Molecular & Cellular Proteomics Pub Date : 2025-09-01 Epub Date: 2025-08-21 DOI:10.1016/j.mcpro.2025.101058
Victoria Soto, Veronika Jurczuk, Lilian Valadares Tose, Christian Alcalde Pretel, Victoria Garcia, Leah Farhadi, Sujad Younis, Natasa Strbo, Ahmed Hawash, Oliver Umland, Matthew Hardy, Carlos E Arteta Higgins, Jason Levine, Juan Bravo, Brian Eliceiri, Jennifer C Tang, Jose A Jaller, Hadar Lev-Tov, Vladimir Pozdin, Luis Rodriguez-Menocal, Evangelos Badiavas, Robert S Kirsner, Francisco A Fernandez Lima, Ivan Jozic
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引用次数: 0

Abstract

Chronic wounds such as diabetic foot ulcers (DFUs) and venous leg ulcers (VLUs) are a growing public health burden, contributing to significant morbidity, healthcare costs, and mortality. Current management strategies are hampered by the inability to accurately predict healing trajectories or identify early treatment failures. Here, we present a novel, non-invasive proteomic approach that leverages routinely discarded wound dressings to profile the wound microenvironment across soluble, cellular, and extracellular vesicle (EV) compartments. Using a cohort of patients with DFU and VLU (n = 16), we performed spatially resolved, longitudinal sampling over 4 weeks and identified distinct proteomic signatures associated with healing versus non-healing outcomes. Mass spectrometry revealed more than 1000 unique proteins from viable cells and EVs as well as 489 proteins identified from soluble wound fluid. Our methodology captured immune cell phenotypes, enabling insight into tissue-specific immune responses without the need for biopsy. Longitudinal surveillance revealed patient-specific protein trajectories that correlated with wound size changes, supporting the feasibility of biomarker-based monitoring. Notably, differences in keratinocyte activation markers, acute-phase proteins, and EV-associated stress proteins distinguished healing from non-healing wounds. These findings demonstrate the utility of discarded dressings as a rich, untapped source of diagnostic and prognostic biomarkers. This platform has strong potential to inform future "smart" wound care technologies, including dressings capable of real-time biosensing or therapeutic EV delivery. Larger validation studies will be essential to translate these findings into clinical tools for precision wound care.

将废物转化为洞察力:一种新的蛋白质组学方法来发现非侵入性伤口生物标志物。
慢性伤口,如糖尿病足溃疡(DFUs)和下肢静脉溃疡(VLUs)是一个日益严重的公共卫生负担,导致显著的发病率、医疗费用和死亡率。目前的管理策略受到无法准确预测愈合轨迹或识别早期治疗失败的阻碍。在这里,我们提出了一种新的、非侵入性的蛋白质组学方法,利用常规丢弃的伤口敷料来描绘伤口微环境,包括可溶性、细胞和细胞外囊泡(EV)区室。使用DFU和VLU患者队列(n=16),我们在四周内进行了空间分解的纵向采样,并确定了与愈合和非愈合结果相关的不同蛋白质组学特征。质谱分析发现了来自活细胞和ev的1000多种独特蛋白质,以及从可溶性伤口液中鉴定出的489种蛋白质。我们的方法捕获免疫细胞表型,无需活检即可深入了解组织特异性免疫反应。纵向监测揭示了与伤口大小变化相关的患者特异性蛋白质轨迹,支持基于生物标志物的监测的可行性。值得注意的是,角化细胞激活标记物、急性期蛋白和ev相关应激蛋白的差异区分了伤口愈合和未愈合。这些发现证明了废弃敷料作为一种丰富的、尚未开发的诊断和预后生物标志物来源的效用。该平台具有强大的潜力,为未来的“智能”伤口护理技术提供信息,包括能够实时生物传感或治疗性EV输送的敷料。更大规模的验证研究对于将这些发现转化为精确伤口护理的临床工具至关重要。
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来源期刊
Molecular & Cellular Proteomics
Molecular & Cellular Proteomics 生物-生化研究方法
CiteScore
11.50
自引率
4.30%
发文量
131
审稿时长
84 days
期刊介绍: The mission of MCP is to foster the development and applications of proteomics in both basic and translational research. MCP will publish manuscripts that report significant new biological or clinical discoveries underpinned by proteomic observations across all kingdoms of life. Manuscripts must define the biological roles played by the proteins investigated or their mechanisms of action. The journal also emphasizes articles that describe innovative new computational methods and technological advancements that will enable future discoveries. Manuscripts describing such approaches do not have to include a solution to a biological problem, but must demonstrate that the technology works as described, is reproducible and is appropriate to uncover yet unknown protein/proteome function or properties using relevant model systems or publicly available data. Scope: -Fundamental studies in biology, including integrative "omics" studies, that provide mechanistic insights -Novel experimental and computational technologies -Proteogenomic data integration and analysis that enable greater understanding of physiology and disease processes -Pathway and network analyses of signaling that focus on the roles of post-translational modifications -Studies of proteome dynamics and quality controls, and their roles in disease -Studies of evolutionary processes effecting proteome dynamics, quality and regulation -Chemical proteomics, including mechanisms of drug action -Proteomics of the immune system and antigen presentation/recognition -Microbiome proteomics, host-microbe and host-pathogen interactions, and their roles in health and disease -Clinical and translational studies of human diseases -Metabolomics to understand functional connections between genes, proteins and phenotypes
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