{"title":"A semi-mechanistic mathematical framework for simulating multi-hormone dynamics in reproductive endocrinology.","authors":"Alexandre Vallée, Anis Feki, Gaby Moawad, Jean-Marc Ayoubi","doi":"10.1016/j.csbj.2025.08.013","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>The dynamic interplay of ovarian hormones is central to reproductive physiology, yet the complexity of their cyclic variations poses challenges for analysis, simulation, and teaching. This study presents a framework for generating physiologically constrained, multi-hormone synthetic time series that capture intra- and inter-individual variability across phenotypes.</p><p><strong>Methods: </strong>We developed a semi-mechanistic mathematical framework to generate synthetic multi-hormone profiles (estradiol, FSH, LH, AMH, testosterone, GnRH) using parametric equations embedding known physiological feedbacks (e.g., estradiol-LH delay, estradiol suppression of FSH). Stochastic components were calibrated to reported physiological ranges. Eumenorrheic and PCOS-like phenotypes were defined through parameter adjustments. Data were analysed using Principal Component Analysis (PCA) for phenotype separation, and evaluated in a supervised setting using logistic regression with stratified train/test splitting, reporting accuracy, sensitivity, specificity, and ROC AUC.</p><p><strong>Results: </strong>Eumenorrheic profiles displayed classical mid-cycle estradiol and LH peaks, biphasic FSH, and stable AMH and testosterone levels. In contrast, PCOS profiles showed elevated LH and testosterone, high AMH, blunted estradiol, and dysregulated GnRH pulsatility. PCA revealed clear separation between phenotypes (PC1 +PC2 = 82 % variance), and k-means clustering (k = 2) accurately grouped individuals without label information. PCA showed clear separation between phenotypes, consistent with known endocrine patterns. Logistic regression achieved 100 % accuracy, sensitivity, and specificity, with an AUC of 1.00, confirming robust, phenotype-discriminative features in the synthetic dataset.</p><p><strong>Conclusion: </strong>This simulation framework reproduces physiologically accurate hormone dynamics and discriminates ovulatory from anovulatory cycles, offering applications in AI training, phenotype discovery, and medical education.</p>","PeriodicalId":10715,"journal":{"name":"Computational and structural biotechnology journal","volume":"27 ","pages":"3654-3662"},"PeriodicalIF":4.1000,"publicationDate":"2025-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12395073/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational and structural biotechnology journal","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1016/j.csbj.2025.08.013","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Background: The dynamic interplay of ovarian hormones is central to reproductive physiology, yet the complexity of their cyclic variations poses challenges for analysis, simulation, and teaching. This study presents a framework for generating physiologically constrained, multi-hormone synthetic time series that capture intra- and inter-individual variability across phenotypes.
Methods: We developed a semi-mechanistic mathematical framework to generate synthetic multi-hormone profiles (estradiol, FSH, LH, AMH, testosterone, GnRH) using parametric equations embedding known physiological feedbacks (e.g., estradiol-LH delay, estradiol suppression of FSH). Stochastic components were calibrated to reported physiological ranges. Eumenorrheic and PCOS-like phenotypes were defined through parameter adjustments. Data were analysed using Principal Component Analysis (PCA) for phenotype separation, and evaluated in a supervised setting using logistic regression with stratified train/test splitting, reporting accuracy, sensitivity, specificity, and ROC AUC.
Results: Eumenorrheic profiles displayed classical mid-cycle estradiol and LH peaks, biphasic FSH, and stable AMH and testosterone levels. In contrast, PCOS profiles showed elevated LH and testosterone, high AMH, blunted estradiol, and dysregulated GnRH pulsatility. PCA revealed clear separation between phenotypes (PC1 +PC2 = 82 % variance), and k-means clustering (k = 2) accurately grouped individuals without label information. PCA showed clear separation between phenotypes, consistent with known endocrine patterns. Logistic regression achieved 100 % accuracy, sensitivity, and specificity, with an AUC of 1.00, confirming robust, phenotype-discriminative features in the synthetic dataset.
Conclusion: This simulation framework reproduces physiologically accurate hormone dynamics and discriminates ovulatory from anovulatory cycles, offering applications in AI training, phenotype discovery, and medical education.
期刊介绍:
Computational and Structural Biotechnology Journal (CSBJ) is an online gold open access journal publishing research articles and reviews after full peer review. All articles are published, without barriers to access, immediately upon acceptance. The journal places a strong emphasis on functional and mechanistic understanding of how molecular components in a biological process work together through the application of computational methods. Structural data may provide such insights, but they are not a pre-requisite for publication in the journal. Specific areas of interest include, but are not limited to:
Structure and function of proteins, nucleic acids and other macromolecules
Structure and function of multi-component complexes
Protein folding, processing and degradation
Enzymology
Computational and structural studies of plant systems
Microbial Informatics
Genomics
Proteomics
Metabolomics
Algorithms and Hypothesis in Bioinformatics
Mathematical and Theoretical Biology
Computational Chemistry and Drug Discovery
Microscopy and Molecular Imaging
Nanotechnology
Systems and Synthetic Biology