CAAFE-ResNet: A ResNet With Channel Attention-Augmented Feature Extraction for Prognostic Assessment in Rectal Cancer

IF 1.9 4区 生物学 Q4 CELL BIOLOGY
Qing Lu, Jiaojiao Zhang, Qianwen Xue, Jinping Ma, Sheng Fang, Hui Ma, Yulin Zhang, Longbo Zheng
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Abstract

Magnetic resonance imaging (MRI) has a pivotal role in both pretreatment staging and post-treatment evaluation of rectal cancer. This study presents an innovative deep learning model, CAAFE-ResNet18*, based on the residual neural network ResNet18*. The model features an ingeniously designed feature extraction and complementation module (i.e., CAAFE), which leverages a multiscale dilated convolution parallel architecture combined with a channel attention mechanism (CAM) to achieve multilevel information fusion, spatial feature enhancement and channel feature optimisation. This enables in-depth exploration and augmentation of multilevel downsampled features, significantly improving feature representation capability and overall performance. Testing on rectal cancer MRI data demonstrates that the CAAFE-ResNet18* model significantly outperforms convolutional neural network (CNN) backbone networks and recent state-of-the-art (SOTA) models. This result indicates that the CAAFE model, by complementing and extracting MR images of patients with locally advanced rectal cancer (LARC) features at different scales from ResNet18*, may help to identify patients who will show complete response (CR) at the end of treatment and those who will not respond to therapy (NR) at an early stage of the treatment.

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CAAFE-ResNet:一个具有通道关注增强特征提取的ResNet用于直肠癌预后评估
磁共振成像(MRI)在直肠癌的术前分期和治疗后评估中都具有举足轻重的作用。本研究提出了一种基于残差神经网络ResNet18*的创新深度学习模型CAAFE-ResNet18*。该模型巧妙设计了特征提取与补充模块(CAAFE),利用多尺度展开卷积并行架构结合通道注意机制(CAM)实现多层次信息融合、空间特征增强和通道特征优化。这使得深入探索和增强多层下采样特征,显著提高特征表示能力和整体性能。对直肠癌MRI数据的测试表明,CAAFE-ResNet18*模型显著优于卷积神经网络(CNN)骨干网络和最新的最先进(SOTA)模型。该结果表明,CAAFE模型通过补充和提取ResNet18*中不同尺度的局部晚期直肠癌(LARC)患者的MR图像特征,可能有助于识别在治疗结束时表现出完全缓解(CR)的患者和在治疗早期表现出治疗无反应(NR)的患者。
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来源期刊
IET Systems Biology
IET Systems Biology 生物-数学与计算生物学
CiteScore
4.20
自引率
4.30%
发文量
17
审稿时长
>12 weeks
期刊介绍: IET Systems Biology covers intra- and inter-cellular dynamics, using systems- and signal-oriented approaches. Papers that analyse genomic data in order to identify variables and basic relationships between them are considered if the results provide a basis for mathematical modelling and simulation of cellular dynamics. Manuscripts on molecular and cell biological studies are encouraged if the aim is a systems approach to dynamic interactions within and between cells. The scope includes the following topics: Genomics, transcriptomics, proteomics, metabolomics, cells, tissue and the physiome; molecular and cellular interaction, gene, cell and protein function; networks and pathways; metabolism and cell signalling; dynamics, regulation and control; systems, signals, and information; experimental data analysis; mathematical modelling, simulation and theoretical analysis; biological modelling, simulation, prediction and control; methodologies, databases, tools and algorithms for modelling and simulation; modelling, analysis and control of biological networks; synthetic biology and bioengineering based on systems biology.
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