Research Advance in the Development of Antimicrobial Peptides Using Deep Learning

IF 4.8 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
Yuchen Hu, Junchao Zhou, Yuhang Gao, Ban Chen, Jiangtao Su, Hong Li, Wen Wu
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引用次数: 0

Abstract

As the global issue of antibiotic resistance becomes increasingly severe, antimicrobial peptides (AMPs), a class of short-chain peptides with broad-spectrum antibacterial activity, have garnered significant attention from the scientific community due to their unique antibacterial properties and potential clinical applications. However, traditional methods for discovering and designing AMPs often rely on repetitive laboratory trials and error corrections, which are not only costly but also inefficient. In contrast, the application of artificial intelligence (AI) technology, particularly deep learning algorithms, for screening and predicting AMPs has demonstrated substantial advantages. Deep learning models can automatically learn and extract key features of AMPs from large-scale datasets, enabling efficient prediction of potential AMP sequences. This approach not only significantly enhances the screening efficiency of AMPs but also reduces research and development costs, thereby opening new avenues for the study and application of AMPs. Therefore, this article provides an overview of the workflow and research progress in utilizing deep learning to predict AMP sequences. The limitations and challenges faced by this technology in the field of AMP prediction are also discussed in this review.

Abstract Image

利用深度学习开发抗菌肽的研究进展。
随着全球抗生素耐药性问题日益严重,抗菌肽(antimicrobial peptides, AMPs)作为一类具有广谱抗菌活性的短链肽,因其独特的抗菌特性和潜在的临床应用受到了科学界的广泛关注。然而,发现和设计amp的传统方法往往依赖于重复的实验室试验和错误修正,这不仅成本高昂,而且效率低下。相比之下,人工智能(AI)技术的应用,特别是深度学习算法,在筛选和预测amp方面已经显示出巨大的优势。深度学习模型可以从大规模数据集中自动学习和提取AMP的关键特征,从而有效地预测潜在的AMP序列。该方法不仅显著提高了抗菌肽的筛选效率,而且降低了研发成本,为抗菌肽的研究和应用开辟了新的途径。因此,本文概述了利用深度学习预测AMP序列的工作流程和研究进展。本文还讨论了该技术在AMP预测领域的局限性和面临的挑战。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
6.60
自引率
3.30%
发文量
247
审稿时长
1.7 months
期刊介绍: This distinguished journal publishes articles concerned with all aspects of computational chemistry: analytical, biological, inorganic, organic, physical, and materials. The Journal of Computational Chemistry presents original research, contemporary developments in theory and methodology, and state-of-the-art applications. Computational areas that are featured in the journal include ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformatics.
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