Pressure effect on the atomic structure of amorphous silicon

IF 2.5 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Nicolás Amigo
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引用次数: 0

Abstract

Context

This study explores how hydrostatic pressure influences the atomic structure of amorphous silicon. As pressure increases, the material undergoes densification, reflected in the shift of radial distribution functions and bond angle distributions. While the short-range order undergoes relatively small structural variations, the medium-range order exhibits significant structural rearrangements, including changes in coordination numbers and atomic connectivity. These pressure-induced transformations favor simpler, more compact atomic configurations. The resulting structural reorganization leads to increased internal energy and reduced atomic volume, revealing the energetic cost of compression. Overall, the findings offer insights into the fundamental behavior of amorphous silicon under extreme conditions.

Methods

Molecular dynamics simulations were conducted using the Tersoff potential for LAMMPS to study amorphous silicon. The samples were prepared using a cooling rate of 10\(^{11}\) K/s and then relaxed at 100 K at six different pressures: 0, 2, 4, 6, 8, 10 GPa. Structural properties were calculated using radial distribution functions, bond angle distribution, Voronoi analysis, and atomic volumes, and network analysis was conducted to quantify connectivity among four-coordinated atoms. Calculations were performed using the OVITO software and Python programming language.

压力对非晶硅原子结构的影响
本研究探讨静水压力对非晶硅原子结构的影响。随着压力的增加,材料发生致密化,表现为径向分布函数和键角分布的变化。而短程有序经历相对较小的结构变化,中程有序表现出显著的结构重排,包括配位数和原子连通性的变化。这些由压力引起的转换倾向于更简单、更紧凑的原子构型。由此产生的结构重组导致内部能量的增加和原子体积的减小,揭示了压缩的能量成本。总的来说,这些发现为非晶硅在极端条件下的基本行为提供了见解。方法利用LAMMPS的Tersoff势进行分子动力学模拟,研究非晶硅。样品以10 \(^{11}\) K/s的冷却速率制备,然后在100 K下在0、2、4、6、8、10 GPa六种不同压力下松弛。利用径向分布函数、键角分布、Voronoi分析和原子体积计算结构性质,并通过网络分析量化四配位原子之间的连通性。使用OVITO软件和Python编程语言进行计算。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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