Rapid, Open-Source, and Automated Quantification of the Head Twitch Response in C57BL/6J Mice Using DeepLabCut and Simple Behavioral Analysis

IF 3.7 Q1 CHEMISTRY, MEDICINAL
Alexander D. Maitland, Nicholas R. Gonzalez, Donna Walther, Francisco Pereira, Michael H. Baumann and Grant C. Glatfelter*, 
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引用次数: 0

Abstract

Serotonergic psychedelics induce the head twitch response (HTR) in mice, an index of serotonin (5-HT) 2A receptor (5-HT2A) agonism and a behavioral proxy for psychedelic effects in humans. Existing methods for detecting HTRs include time-consuming visual scoring, magnetometer-based approaches, and analysis of videos using semi-automated commercial software. Here, we present a new automated approach for quantifying HTRs from experimental videos using the open-source machine learning-based toolkits, DeepLabCut (DLC) and Simple Behavioral Analysis (SimBA). Pose estimation DLC models were trained to predict X,Y coordinates of 13 body parts of C57BL/6J mice using historical experimental videos of HTRs induced by various psychedelic drugs. Next, a nonoverlapping set of historical experimental videos was analyzed and used to train SimBA random forest behavioral classifiers to predict the presence of the HTR. The DLC + SimBA approach was then validated using a separate subset of visually scored videos. DLC + SimBA model performance was assessed at different video resolutions (50%, 25%, 12.5%) and frame rates (120, 60, 30 frames per second or fps). Our results indicate that HTRs can be quantified accurately at 50% resolution and 120 fps (precision = 95.45, recall = 95.56, F1 = 95.51) or at lower frame rates and resolutions (i.e., 50% resolution and 60 fps). The best performing DLC + SimBA model combination was deployed to evaluate the effects of bufotenine, a tryptamine derivative with uncharacterized potency and efficacy in the modern HTR paradigm. Interestingly, bufotenine only induced elevated HTRs (ED50 = 0.99 mg/kg, max counts = 24) when serotonin 1A receptors (5-HT1A) were pharmacologically blocked and activity at other sites of action may also impact its pharmacological effects (e.g., serotonin transporter). HTR counts for a subset of 21 videos from bufotenine experiments were strongly correlated for DLC + SimBA vs visual scoring and semi-automated software detection methods (r = 0.98 and 0.99). Finally, the DLC + SimBA approach displayed high accuracy when compared to visual scoring of HTRs for three serotonergic psychedelic drugs with variable HTR frequencies (r = 0.99 vs mean visual scores from 3 blinded raters). In summary, the DLC + SimBA approach represents a modular, noninvasive, and open-source method of HTR detection from experimental videos with accuracy comparable to magnetometer-based approaches and greater speed than visual scoring.

Abstract Image

使用DeepLabCut和简单的行为分析快速、开源和自动量化C57BL/6J小鼠的头抽搐反应
5-羟色胺能致幻剂诱导小鼠头抽搐反应(HTR),这是5-羟色胺(5-HT) 2A受体(5-HT2A)激动作用的指标,也是人类致幻剂作用的行为代理。现有的检测htr的方法包括耗时的视觉评分、基于磁力计的方法和使用半自动商业软件的视频分析。在这里,我们提出了一种新的自动化方法,使用基于开源机器学习的工具包DeepLabCut (DLC)和Simple Behavioral Analysis (SimBA),从实验视频中量化htr。利用各种致幻剂致htr的历史实验视频,训练姿态估计DLC模型预测C57BL/6J小鼠13个身体部位的X、Y坐标。接下来,分析一组不重叠的历史实验视频,并使用SimBA随机森林行为分类器来预测HTR的存在。然后,DLC + SimBA方法使用单独的视觉评分视频子集进行验证。DLC + SimBA模型在不同视频分辨率(50%、25%、12.5%)和帧率(120、60、30帧/秒或fps)下的性能进行了评估。我们的研究结果表明,在50%分辨率和120帧/秒(精度= 95.45,召回率= 95.56,F1 = 95.51)或更低的帧率和分辨率(即50%分辨率和60帧/秒)下,htr可以准确地量化。采用表现最佳的DLC + SimBA模型组合来评估bufotenine的效果,bufotenine是一种色胺衍生物,在现代HTR范式中具有未知的效力和功效。有趣的是,当5-HT1A受体(5-HT1A)被药物阻断时,丁氟替宁仅诱导htr升高(ED50 = 0.99 mg/kg,最大计数= 24),其他作用部位的活性也可能影响其药理作用(例如,5-HT1A转运体)。bufotenine实验的21个视频子集的HTR计数与DLC + SimBA与视觉评分和半自动软件检测方法强相关(r = 0.98和0.99)。最后,DLC + SimBA方法与三种不同HTR频率的5 -羟色胺类致幻剂的HTR视觉评分相比显示出较高的准确性(r = 0.99,与3个盲法评分者的平均视觉评分相比)。总之,DLC + SimBA方法代表了一种模块化、非侵入性和开源的HTR检测实验视频方法,其精度与基于磁力计的方法相当,速度比视觉评分更快。
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来源期刊
ACS Pharmacology and Translational Science
ACS Pharmacology and Translational Science Medicine-Pharmacology (medical)
CiteScore
10.00
自引率
3.30%
发文量
133
期刊介绍: ACS Pharmacology & Translational Science publishes high quality, innovative, and impactful research across the broad spectrum of biological sciences, covering basic and molecular sciences through to translational preclinical studies. Clinical studies that address novel mechanisms of action, and methodological papers that provide innovation, and advance translation, will also be considered. We give priority to studies that fully integrate basic pharmacological and/or biochemical findings into physiological processes that have translational potential in a broad range of biomedical disciplines. Therefore, studies that employ a complementary blend of in vitro and in vivo systems are of particular interest to the journal. Nonetheless, all innovative and impactful research that has an articulated translational relevance will be considered. ACS Pharmacology & Translational Science does not publish research on biological extracts that have unknown concentration or unknown chemical composition. Authors are encouraged to use the pre-submission inquiry mechanism to ensure relevance and appropriateness of research.
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