Contrastive learning and prior knowledge-induced feature extraction network for prediction of high-risk recurrence areas in Gliomas

IF 11.8 1区 医学 Q1 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE
Boya Wu , Jianyun Cao , Wei Xiong , Yanchun Lv , Guohua Zhao , Xiaoyue Ma , Ying Zhang , Jiawei Zhang , Junguo Bu , Tao Xie , Qianjin Feng , Meiyan Huang
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引用次数: 0

Abstract

Gliomas can easily recur even after standard treatments, and their recurrence may be related to insufficient radiation doses received by high-risk recurrence areas (HRA). Therefore, HRA prediction can help clinical experts in formulating effective radiotherapy plans. However, research on HRA prediction using early postoperative conventional MRI images with total resection is lacking. This gap is due to multifold challenges, including visually minimal differences between HRA and non-HRA and small dataset size caused by missing follow-up data. A contrastive learning and prior knowledge-induced feature extraction network (CLPKnet) to explore HRA-related features and achieve HRA prediction was proposed in this paper. First, a contrastive and multisequence learning-based encoder was proposed to effectively extract diverse features across multiple MRI sequences around the operative cavity. Specifically, a contrastive learning method was employed to pretrain the encoder, which enabled it to capture subtle differences between HRA and non-HRA regions while mitigating the challenges posed by the limited dataset size. Second, clinical prior knowledge was incorporated into the CLPKnet to guide the model in learning the patterns of glioma growth and improve its discriminative capability for identifying HRA regions. Third, a dual-focus fusion module was utilized to explore important sequential features and spatial regions and effectively fused multisequence features to provide complementary information associated with glioma recurrence. Fourth, to balance clinical needs and task difficulty, we used a patch-based prediction method to predict the recurrent probability. The CLPKnet was validated on a multicenter dataset from four hospitals, and a remarkable performance was achieved. Moreover, the interpretability and robustness of our method were evaluated to illustrate its effectiveness and credibility. Therefore, the CLPKnet displays a great application potential for HRA prediction. The codes will be available at https://github.com/Meiyan88/CLPKnet.
对比学习和先验知识诱导特征提取网络预测胶质瘤高危复发区域
胶质瘤即使经过标准治疗也很容易复发,其复发可能与高危复发区(HRA)接受的辐射剂量不足有关。因此,HRA预测可以帮助临床专家制定有效的放疗计划。然而,术后早期常规MRI全切除术预测HRA的研究尚缺乏。这种差距是由于多重挑战造成的,包括HRA和非HRA之间的视觉差异很小,以及缺少后续数据导致的数据集规模小。本文提出了一种基于对比学习和先验知识诱导的特征提取网络(CLPKnet),用于挖掘HRA相关特征并实现HRA预测。首先,提出了一种基于对比和多序列学习的编码器,以有效地提取手术腔周围多个MRI序列的不同特征。具体而言,采用对比学习方法对编码器进行预训练,使其能够捕获HRA和非HRA区域之间的细微差异,同时减轻了有限数据集大小带来的挑战。其次,将临床先验知识纳入CLPKnet,指导该模型学习胶质瘤生长模式,提高其识别HRA区域的能力。第三,利用双焦点融合模块探索重要序列特征和空间区域,有效融合多序列特征,提供与胶质瘤复发相关的互补信息。第四,为了平衡临床需求和任务难度,我们采用基于patch的预测方法预测复发概率。CLPKnet在来自四家医院的多中心数据集上进行了验证,并取得了显着的性能。此外,我们的方法的可解释性和鲁棒性进行了评估,以说明其有效性和可信性。因此,CLPKnet在HRA预测中显示出很大的应用潜力。这些代码可在https://github.com/Meiyan88/CLPKnet上获得。
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来源期刊
Medical image analysis
Medical image analysis 工程技术-工程:生物医学
CiteScore
22.10
自引率
6.40%
发文量
309
审稿时长
6.6 months
期刊介绍: Medical Image Analysis serves as a platform for sharing new research findings in the realm of medical and biological image analysis, with a focus on applications of computer vision, virtual reality, and robotics to biomedical imaging challenges. The journal prioritizes the publication of high-quality, original papers contributing to the fundamental science of processing, analyzing, and utilizing medical and biological images. It welcomes approaches utilizing biomedical image datasets across all spatial scales, from molecular/cellular imaging to tissue/organ imaging.
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