Theoretical study of the reactivity of oligo-pyrrole derivatives linked at their ends to the Magnesol, Ferrol, and Zinkol fragments: NBO, DFT, and TD-DFT calculations

IF 2.5 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Mohammed Zenati, Madani Hedidi, Abdelkader M. Elhorri, Hicham Mahdjoub-araibi, Assia Laib
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Abstract

Context

This study compares the electronic and structural properties of oligopyrroles (OPn) grafted with metal rings (Magnesol OPnMg, Ferrol OPnFe, and Zinkol OPnZn) with those of standard oligopyrroles (OPn). In the context of the polymerization of oligomers from n = 1 to n = 15, the parameters of global reactivity and excited states obey exponential equations (ƒ(x) = A + B ExpR(x)), allowing values to be predicted to infinity. The corresponding infinity results reveal that energy gaps (ΔEH-L) vary between 3.14 and 5.20 eV, while chemical hardnesses (η) oscillate between 1.507 and 2.60 eV, with overall electrophilicity (ω) and nucleophilicity (Nu) of 0.74–1.40 eV and 5.47–5.53 eV, respectively. The new oligopyrrole derivatives show increases in intramolecular charge transfer (ICT) and UV–Vis absorptions in the violet (λmax between 407 and 431 nm). NBO analysis shows a reduction in hydrogen charges in the –NH groups of oligopyrroles based on metal derivatives, enhancing their nucleophilicity. In addition, these molecules display better solubility, with favorable solvation energies (ΔGsolv) (24–35 kcal-mol−1) compared to OPn. Finally, metal-based derivatives show stronger interactions with formaldehyde (HCHO) in aqueous media than OPn, demonstrating interaction energy differences (Eint) ranging from 0.7 to 1.40 kcal-mol−1.

Methods

All calculations were performed using the Gaussian 16 program. The selected functionals are: B3LYP, CAM–BLYP, B3LYP–D3, CAM–BLYP–D3, and TD–CAM–BLYP. The basis–sets used are: 6–31 +  + G(d,p) and LanL2DZ. Finally, the natural bond orbital (NBO) method was used in this study.

Abstract Image

低聚吡咯衍生物的反应性的理论研究,在其末端连接到氧化镁,铁,和锌科尔片段:NBO, DFT,和TD-DFT计算。
背景:本研究比较了接枝金属环的低聚吡咯(OPn)(氧化镁OPnMg,铁OPnFe和锌kol OPnZn)与标准低聚吡咯(OPn)的电子和结构性质。在n = 1到n = 15的低聚物聚合中,全局反应性和激发态参数服从指数方程(f (x) = A + B Exp-R(x)),从而可以预测到无穷大。相应的无穷远性结果表明,能隙(ΔEH-L)在3.14 ~ 5.20 eV之间变化,化学硬度(η)在1.507 ~ 2.60 eV之间振荡,总亲电性(ω)和亲核性(Nu)分别为0.74 ~ 1.40 eV和5.47 ~ 5.53 eV。新的低聚吡咯衍生物显示出分子内电荷转移(ICT)和紫外-可见吸收的增加(λmax在407和431 nm之间)。NBO分析表明,基于金属衍生物的低聚吡啶-NH基团的氢电荷减少,增强了它们的亲核性。此外,与OPn相比,这些分子表现出更好的溶解度,具有良好的溶剂化能(ΔGsolv) (24-35 kcal-mol-1)。最后,金属基衍生物在水溶液中与甲醛(HCHO)的相互作用比OPn强,相互作用能差(Eint)在0.7 ~ 1.40 kcal-mol-1之间。方法:采用高斯16程序进行计算。所选函数有:B3LYP、CAM-BLYP、B3LYP- d3、CAM-BLYP- d3和TD-CAM-BLYP。使用的基集为:6-31 + + G(d,p)和LanL2DZ。最后,本研究采用自然键轨道(NBO)方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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