An integrated optimization and deep learning pipeline for predicting live birth success in IVF using feature optimization and transformer-based models

IF 4.8 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Arezoo Borji , Hossam Haick , Birgit Pohn , Antonia Graf , Jana Zakall , S M Ragib Shahriar Islam , Gernot Kronreif , Daniel Kovatchki , Heinz Strohmer , Sepideh Hatamikia
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Abstract

The complicated interplay of clinical, demographic, and procedural factors makes it difficult to predict the success of in vitro fertilization (IVF), a commonly used assisted reproductive technology. The goal of this research was to create an artificial intelligence (AI) pipeline that could predict live birth outcomes in IVF treatments with high accuracy.

Design

We evaluated prediction performance by integrating different feature selection methods, such as principal component analysis (PCA) and particle swarm optimization (PSO), with different machine learning-based classifiers, including random forest (RF) and decision tree, as well as deep learning-based classifiers, including a custom transformer-based model and a Tab_transformer model with an attention mechanism. Additionally, this study analyzes confounding factors like patient age and previous IVF cycles and explores the influence of different perturbation and preprocessing techniques and validates the model’s robustness under varied scenarios. In addition, Shapley Additive Explanations (SHAP) analysis was performed to enhance interpretability of methods.

Results

This research demonstrated that the best performance was achieved by combining PSO for feature selection with the Tab_transformer-based deep learning model, yielding an accuracy of 97 % and an AUC of 98.4 %, highlighting its significant performance in prediction live births. By identifying the most significant predictors of infertility and guaranteeing clinical significance, SHAP analysis significantly improved interpretability.

Conclusion

With the accuracy and interpretability, this study develops a strong AI pipeline for predicting live birth outcomes in IVF. This study establishes a highly accurate AI pipeline for predicting live birth outcomes in IVF, demonstrating its potential to enhance personalized fertility treatments.
使用特征优化和基于变压器的模型预测试管婴儿活产成功的集成优化和深度学习管道
临床、人口统计学和程序因素的复杂相互作用使得体外受精(IVF)这一常用的辅助生殖技术的成功预测变得困难。这项研究的目标是创建一个人工智能(AI)管道,可以在试管婴儿治疗中高精度地预测活产结果。我们通过将不同的特征选择方法(如主成分分析(PCA)和粒子群优化(PSO))与不同的基于机器学习的分类器(包括随机森林(RF)和决策树)以及基于深度学习的分类器(包括基于自定义变压器的模型和具有注意力机制的Tab_transformer模型)集成在一起来评估预测性能。此外,本研究还分析了患者年龄和既往IVF周期等混杂因素,探讨了不同扰动和预处理技术的影响,并验证了模型在不同场景下的鲁棒性。此外,还进行了Shapley加性解释(SHAP)分析,以提高方法的可解释性。结果将PSO与基于tab_transformer的深度学习模型相结合进行特征选择,准确率为97%,AUC为98.4%,显示了其在预测活产率方面的显著性能。通过确定最重要的不孕症预测因素并保证临床意义,SHAP分析显著提高了可解释性。结论本研究具有准确性和可解释性,为试管婴儿(IVF)的活产结局预测开发了强大的人工智能管道。本研究建立了一个高度准确的人工智能管道,用于预测试管婴儿的活产结果,展示了其增强个性化生育治疗的潜力。
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来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
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