Xi Chen , Jiahuan Lv , Zeyu Wang , Genggeng Qin , Zhiguo Zhou
{"title":"Adaptive-AutoMO: A domain adaptive automated multiobjective neural network for reliable lesion malignancy prediction via digital breast tomosynthesis","authors":"Xi Chen , Jiahuan Lv , Zeyu Wang , Genggeng Qin , Zhiguo Zhou","doi":"10.1016/j.jbi.2025.104869","DOIUrl":null,"url":null,"abstract":"<div><div>Early diagnosis of breast cancer remains a significant global health challenge, and the potential use of deep learning in Digital Breast Tomosynthesis (DBT) based breast cancer diagnosis is a promising avenue. To address data scarcity and domain shift problems in building a lesion malignancy predictive model, we proposed a domain adaptive automated multiobjective neural network (Adaptive-AutoMO) for reliable lesion malignancy prediction via DBT. Adaptive-AutoMO addresses three key challenges simultaneously, they are: privacy preserving, credibility measurement, and balance, which consists of training, adaptation and testing stages. In the training stage, we developed a multiobjective immune neural architecture search algorithm (MINAS) to generate a Pareto-optimal model set with balanced sensitivity and specificity and introduced a Bayesian optimization algorithm to optimize the hyperparameters. In the adaptation stage, a semi-supervised domain adaptive feature network based on maximum mean discrepancy (MMD-SSDAF) was designed, which can make the balanced models adaptable to the target domain and preserve the data privacy in the source domain. In the testing stage, we proposed an evidence reasoning method based on entropy (ERE) that can fuse multiple adapted models and estimate uncertainty to improve the model credibility. The experiments on two DBT image datasets (source and target domain datasets) revealed that Adaptive-AutoMO outperformed ResNet-18, DenseNet-121, and other available domain adaptive models. Meanwhile, the removal of high uncertainty samples resulted in a performance improvement in the target domain. These experiments affirmed that Adaptive-AutoMO can not only enhance model’s performance, but also preserve privacy in the source domain data, boost model credibility, and achieve a balance between sensitivity and specificity.</div></div>","PeriodicalId":15263,"journal":{"name":"Journal of Biomedical Informatics","volume":"169 ","pages":"Article 104869"},"PeriodicalIF":4.5000,"publicationDate":"2025-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biomedical Informatics","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S153204642500098X","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
Early diagnosis of breast cancer remains a significant global health challenge, and the potential use of deep learning in Digital Breast Tomosynthesis (DBT) based breast cancer diagnosis is a promising avenue. To address data scarcity and domain shift problems in building a lesion malignancy predictive model, we proposed a domain adaptive automated multiobjective neural network (Adaptive-AutoMO) for reliable lesion malignancy prediction via DBT. Adaptive-AutoMO addresses three key challenges simultaneously, they are: privacy preserving, credibility measurement, and balance, which consists of training, adaptation and testing stages. In the training stage, we developed a multiobjective immune neural architecture search algorithm (MINAS) to generate a Pareto-optimal model set with balanced sensitivity and specificity and introduced a Bayesian optimization algorithm to optimize the hyperparameters. In the adaptation stage, a semi-supervised domain adaptive feature network based on maximum mean discrepancy (MMD-SSDAF) was designed, which can make the balanced models adaptable to the target domain and preserve the data privacy in the source domain. In the testing stage, we proposed an evidence reasoning method based on entropy (ERE) that can fuse multiple adapted models and estimate uncertainty to improve the model credibility. The experiments on two DBT image datasets (source and target domain datasets) revealed that Adaptive-AutoMO outperformed ResNet-18, DenseNet-121, and other available domain adaptive models. Meanwhile, the removal of high uncertainty samples resulted in a performance improvement in the target domain. These experiments affirmed that Adaptive-AutoMO can not only enhance model’s performance, but also preserve privacy in the source domain data, boost model credibility, and achieve a balance between sensitivity and specificity.
期刊介绍:
The Journal of Biomedical Informatics reflects a commitment to high-quality original research papers, reviews, and commentaries in the area of biomedical informatics methodology. Although we publish articles motivated by applications in the biomedical sciences (for example, clinical medicine, health care, population health, and translational bioinformatics), the journal emphasizes reports of new methodologies and techniques that have general applicability and that form the basis for the evolving science of biomedical informatics. Articles on medical devices; evaluations of implemented systems (including clinical trials of information technologies); or papers that provide insight into a biological process, a specific disease, or treatment options would generally be more suitable for publication in other venues. Papers on applications of signal processing and image analysis are often more suitable for biomedical engineering journals or other informatics journals, although we do publish papers that emphasize the information management and knowledge representation/modeling issues that arise in the storage and use of biological signals and images. System descriptions are welcome if they illustrate and substantiate the underlying methodology that is the principal focus of the report and an effort is made to address the generalizability and/or range of application of that methodology. Note also that, given the international nature of JBI, papers that deal with specific languages other than English, or with country-specific health systems or approaches, are acceptable for JBI only if they offer generalizable lessons that are relevant to the broad JBI readership, regardless of their country, language, culture, or health system.