Two-Step Hybrid Method for the Energetics of Individual Noncovalent Interactions in Molecular Crystals

IF 3.4 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
Bharti Dehariya, Ayush Shivhare, Mini Bharati Ahirwar, Milind M. Deshmukh
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Abstract

We present a two-step method for the direct estimation of the energy of individual non-covalent interactions (NCIs) such as hydrogen bond (HB), CH…π or π…π interactions in any given molecular crystal. The first step of this method is to calculate the energy of a NCI by a molecular tailoring approach based (MTA-based) method utilizing a sufficiently large molecular crystal structure. This calculation is performed at the low Hartree–Fock (HF) level. In the next step, the energy of the same referenced NCI is evaluated by the MTA-based method employing a suitable monomeric or dimeric species. This calculation is usually performed at both the high (B3LYP, MP2 or CCSD(T)) and low (HF) levels. Note that the NCI energies in monomeric or dimeric species are significantly different from those in the actual crystal. The difference in the energy calculated in the second step at high and low levels is added to the energy of this NCI calculated (at HF level) in the first step employing a large molecular crystal. The energies of NCIs calculated by this two-step method are compared with their actual crystal counterparts. For this purpose, molecular crystals of L-Histidine (LH), nitromalonamide (NMA) and salicylic acid (SA) are chosen as test cases. It is found that the proposed two-step method provides very accurate energy of individual NCIs in these molecular crystals. For instance, the estimated energies of NCIs by the proposed two-step method are in excellent linear agreement with their actual crystal counterparts (R2 = 0.9983). Furthermore, RMSD and standard deviation are 0.22 and 0.24 kcal/mol, respectively, with a mean and maximum absolute error being 0.15 and 0.51 kcal/mol, respectively. Importantly, the two-step method is computationally efficient and saves nearly 50% of computational time vis-à-vis its full calculation counterpart employing the actual molecular crystal.

分子晶体中单个非共价相互作用能量学的两步杂化方法
我们提出了一种两步法,用于直接估计任何给定分子晶体中单个非共价相互作用(nci)的能量,如氢键(HB), CH…π或π…π相互作用。该方法的第一步是利用足够大的分子晶体结构,通过基于分子裁剪方法(基于mta)的方法计算NCI的能量。该计算是在低哈特里-福克(HF)水平下进行的。在下一步中,采用合适的单体或二聚体,通过基于mta的方法评估相同参考NCI的能量。这种计算通常在高电平(B3LYP、MP2或CCSD(T))和低电平(HF)下进行。请注意,单体或二聚体的NCI能量与实际晶体中的NCI能量有很大不同。第二步在高能级和低能级上计算的能量差加到采用大分子晶体的第一步计算的NCI的能量(在HF能级)上。用这种两步法计算的NCIs的能量与实际晶体的能量进行了比较。为此,我们选择l -组氨酸(LH)、硝基丙二胺(NMA)和水杨酸(SA)的分子晶体作为实验用例。结果表明,所提出的两步法能非常精确地给出这些分子晶体中单个NCIs的能量。例如,采用两步法估算的NCIs能量与实际晶体能量具有良好的线性一致性(R2 = 0.9983)。RMSD和标准差分别为0.22和0.24 kcal/mol,平均和最大绝对误差分别为0.15和0.51 kcal/mol。重要的是,两步法计算效率高,与使用实际分子晶体的完整计算相比,节省了近50%的计算时间-à-vis。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
6.60
自引率
3.30%
发文量
247
审稿时长
1.7 months
期刊介绍: This distinguished journal publishes articles concerned with all aspects of computational chemistry: analytical, biological, inorganic, organic, physical, and materials. The Journal of Computational Chemistry presents original research, contemporary developments in theory and methodology, and state-of-the-art applications. Computational areas that are featured in the journal include ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformatics.
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