Population Analysis From Variational Chemical Partition of Molecular Position Space

IF 4.8 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
Bernard Silvi, M. Esmaïl Alikhani
{"title":"Population Analysis From Variational Chemical Partition of Molecular Position Space","authors":"Bernard Silvi,&nbsp;M. Esmaïl Alikhani","doi":"10.1002/jcc.70184","DOIUrl":null,"url":null,"abstract":"<p>Two years ago, a partition was proposed in the position space of the charge distribution of atoms and molecules, relying on the optimization of the boundaries of space-filling non-overlapping localization regions. This is achieved with the help of global objective functions providing either a measure of the dispersion of numbers of electrons in each localization region or of the dependence of these numbers between them. The output of the method reproduces very well the expected chemical structures in terms of atomic shells, bonds, and lone pairs domains. This method, inspired by the data processing of experimental results, is by construction free of any approximation since it only requires as input the one and two-particle densities of probability. It is based on a strict definition of the concepts of chemical entity, i, e, a set of nuclei and of a given number of localized electrons, for which an electron count followed by a multivariate analysis is carried out. In its first version, the software was extremely inefficient, and its use was therefore limited to atoms and small molecular systems to keep the computational effort within reasonable limits. A significant improvement has been recently achieved, enabling calculations of molecules as large as polyaromatic hydrocarbons. In the present paper, we first discuss the philosophy of previous population schemes, then we describe the features of our new family of population analysis, and then report the results obtained on a rather large sample of molecules and complexes, including polyaromatic hydrocarbons, propellanes, transition metal carbonyl 1:1 complexes and hydrogen-bonded systems as well as reaction mechanisms.</p>","PeriodicalId":188,"journal":{"name":"Journal of Computational Chemistry","volume":"46 20","pages":""},"PeriodicalIF":4.8000,"publicationDate":"2025-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jcc.70184","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Computational Chemistry","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/jcc.70184","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

Abstract

Two years ago, a partition was proposed in the position space of the charge distribution of atoms and molecules, relying on the optimization of the boundaries of space-filling non-overlapping localization regions. This is achieved with the help of global objective functions providing either a measure of the dispersion of numbers of electrons in each localization region or of the dependence of these numbers between them. The output of the method reproduces very well the expected chemical structures in terms of atomic shells, bonds, and lone pairs domains. This method, inspired by the data processing of experimental results, is by construction free of any approximation since it only requires as input the one and two-particle densities of probability. It is based on a strict definition of the concepts of chemical entity, i, e, a set of nuclei and of a given number of localized electrons, for which an electron count followed by a multivariate analysis is carried out. In its first version, the software was extremely inefficient, and its use was therefore limited to atoms and small molecular systems to keep the computational effort within reasonable limits. A significant improvement has been recently achieved, enabling calculations of molecules as large as polyaromatic hydrocarbons. In the present paper, we first discuss the philosophy of previous population schemes, then we describe the features of our new family of population analysis, and then report the results obtained on a rather large sample of molecules and complexes, including polyaromatic hydrocarbons, propellanes, transition metal carbonyl 1:1 complexes and hydrogen-bonded systems as well as reaction mechanisms.

Abstract Image

分子位置空间变分化学划分的居群分析
两年前,在原子和分子电荷分布的位置空间中,提出了一种基于空间填充非重叠局域区域边界优化的划分方法。这是在全局目标函数的帮助下实现的,该函数提供了每个局部区域中电子数色散的度量或这些数字之间的依赖关系。该方法的输出很好地再现了原子壳层、键和孤对域方面的预期化学结构。这种方法的灵感来自于实验结果的数据处理,它的构造不需要任何近似,因为它只需要输入概率的一个和两个粒子密度。它基于化学实体概念的严格定义,即一组原子核和给定数量的局域电子,为此进行了电子计数,然后进行了多元分析。在第一个版本中,该软件效率极低,因此它的使用仅限于原子和小分子系统,以使计算工作量保持在合理的范围内。最近取得了一项重大改进,可以计算像多芳烃这样大的分子。在本文中,我们首先讨论了以前的居群方案的原理,然后描述了我们的新居群分析家族的特点,然后报告了在相当大的分子和配合物样本上获得的结果,包括多芳烃,推进剂,过渡金属羰基1:1配合物和氢键体系及其反应机理。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
6.60
自引率
3.30%
发文量
247
审稿时长
1.7 months
期刊介绍: This distinguished journal publishes articles concerned with all aspects of computational chemistry: analytical, biological, inorganic, organic, physical, and materials. The Journal of Computational Chemistry presents original research, contemporary developments in theory and methodology, and state-of-the-art applications. Computational areas that are featured in the journal include ab initio and semiempirical quantum mechanics, density functional theory, molecular mechanics, molecular dynamics, statistical mechanics, cheminformatics, biomolecular structure prediction, molecular design, and bioinformatics.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信