Samuel Nycklemoe, Sriharsha Devarapu, Yanjun Gao, Kyle Carey, Nicholas Kuehnel, Neil Munjal, Priti Jani, Matthew Churpek, Dmitriy Dligach, Majid Afshar, Anoop Mayampurath
{"title":"Explaining alerts from a pediatric risk prediction model using clinical text.","authors":"Samuel Nycklemoe, Sriharsha Devarapu, Yanjun Gao, Kyle Carey, Nicholas Kuehnel, Neil Munjal, Priti Jani, Matthew Churpek, Dmitriy Dligach, Majid Afshar, Anoop Mayampurath","doi":"10.1093/jamia/ocaf121","DOIUrl":null,"url":null,"abstract":"<p><strong>Objective: </strong>Risk prediction models are used in hospitals to identify pediatric patients at risk of clinical deterioration, enabling timely interventions and rescue. The objective of this study was to develop a new explainer algorithm that uses a patient's clinical notes to generate text-based explanations for risk prediction alerts.</p><p><strong>Materials and methods: </strong>We conducted a retrospective study of 39 406 patient admissions to the American Family Children's Hospital at the University of Wisconsin-Madison (2009-2020). The pediatric Calculated Assessment of Risk and Triage (pCART) validated risk prediction model was used to identify children at risk for deterioration. A transformer model was trained to use clinical notes from the 12-hour period preceding each pCART score to predict whether a patient was flagged as at risk. Then, label-aware attention highlighted text phrases most important to an at-risk alert. The study cohort was randomly split into derivation (60%) and validation (20%) data, and a separate test (20%) was used to evaluate the explainer's performance.</p><p><strong>Results: </strong>Our pCART Explainer algorithm performed well in discriminating at-risk pCART alert vs no alert (c-statistic 0.805). Sample explanations from pCART Explainer revealed clinically important phrases such as \"rapid breathing,\" \"fall risk,\" \"distension,\" and \"grunting,\" thereby demonstrating excellent face validity.</p><p><strong>Discussion: </strong>The pCART Explainer could quickly orient clinicians to the patient's condition by drawing attention to key phrases in notes, potentially enhancing situational awareness and guiding decision-making.</p><p><strong>Conclusion: </strong>We developed pCART Explainer, a novel algorithm that highlights text within clinical notes to provide medically relevant context about deterioration alerts, thereby improving the explainability of the pCART model.</p>","PeriodicalId":50016,"journal":{"name":"Journal of the American Medical Informatics Association","volume":" ","pages":""},"PeriodicalIF":4.7000,"publicationDate":"2025-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of the American Medical Informatics Association","FirstCategoryId":"91","ListUrlMain":"https://doi.org/10.1093/jamia/ocaf121","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INFORMATION SYSTEMS","Score":null,"Total":0}
引用次数: 0
Abstract
Objective: Risk prediction models are used in hospitals to identify pediatric patients at risk of clinical deterioration, enabling timely interventions and rescue. The objective of this study was to develop a new explainer algorithm that uses a patient's clinical notes to generate text-based explanations for risk prediction alerts.
Materials and methods: We conducted a retrospective study of 39 406 patient admissions to the American Family Children's Hospital at the University of Wisconsin-Madison (2009-2020). The pediatric Calculated Assessment of Risk and Triage (pCART) validated risk prediction model was used to identify children at risk for deterioration. A transformer model was trained to use clinical notes from the 12-hour period preceding each pCART score to predict whether a patient was flagged as at risk. Then, label-aware attention highlighted text phrases most important to an at-risk alert. The study cohort was randomly split into derivation (60%) and validation (20%) data, and a separate test (20%) was used to evaluate the explainer's performance.
Results: Our pCART Explainer algorithm performed well in discriminating at-risk pCART alert vs no alert (c-statistic 0.805). Sample explanations from pCART Explainer revealed clinically important phrases such as "rapid breathing," "fall risk," "distension," and "grunting," thereby demonstrating excellent face validity.
Discussion: The pCART Explainer could quickly orient clinicians to the patient's condition by drawing attention to key phrases in notes, potentially enhancing situational awareness and guiding decision-making.
Conclusion: We developed pCART Explainer, a novel algorithm that highlights text within clinical notes to provide medically relevant context about deterioration alerts, thereby improving the explainability of the pCART model.
期刊介绍:
JAMIA is AMIA''s premier peer-reviewed journal for biomedical and health informatics. Covering the full spectrum of activities in the field, JAMIA includes informatics articles in the areas of clinical care, clinical research, translational science, implementation science, imaging, education, consumer health, public health, and policy. JAMIA''s articles describe innovative informatics research and systems that help to advance biomedical science and to promote health. Case reports, perspectives and reviews also help readers stay connected with the most important informatics developments in implementation, policy and education.