Next-Generation Protein-Ligand Interaction Networks: APEX as a Powerful Technology.

IF 3.6 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
José Miguel Quintero-Ferrer, Lucas Silva de Oliveira, Paula Marian Vieira Goulart, Thiago Albuquerque Souza Campos, Coralie Martin, Philippe Grellier, Izabela Marques Dourado Bastos, Sébastien Charneau
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引用次数: 0

Abstract

Peroxidases are essential enzymes that catalyze redox reactions, with wide-ranging biological implications. Among these, an enhanced ascorbate peroxidase (APEX) has emerged as a valuable tool for studying intricate intracellular events with spatiotemporal precision, particularly in protein-protein, protein-RNA, and protein-DNA interaction networks in living cells. This review discusses APEX's structural and functional attributes, its evolution through genetic engineering, and its transformative applications in high-resolution mapping used for proteomic and transcriptomic studies. Furthermore, it highlights recent advancements in substrate innovation and addresses current challenges and future directions in leveraging APEX for cutting-edge biological research.

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下一代蛋白质-配体相互作用网络:APEX是一项强大的技术。
过氧化物酶是催化氧化还原反应的重要酶,具有广泛的生物学意义。其中,增强的抗坏血酸过氧化物酶(APEX)已成为研究复杂的细胞内事件的有价值的工具,具有时空精度,特别是在活细胞中的蛋白质-蛋白质,蛋白质- rna和蛋白质- dna相互作用网络中。本文综述了APEX的结构和功能属性,通过基因工程的进化,以及它在蛋白质组学和转录组学研究的高分辨率定位中的革命性应用。此外,它还强调了衬底创新的最新进展,并解决了利用APEX进行尖端生物学研究的当前挑战和未来方向。
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来源期刊
Proteomes
Proteomes Biochemistry, Genetics and Molecular Biology-Clinical Biochemistry
CiteScore
6.50
自引率
3.00%
发文量
37
审稿时长
11 weeks
期刊介绍: Proteomes (ISSN 2227-7382) is an open access, peer reviewed journal on all aspects of proteome science. Proteomes covers the multi-disciplinary topics of structural and functional biology, protein chemistry, cell biology, methodology used for protein analysis, including mass spectrometry, protein arrays, bioinformatics, HTS assays, etc. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. Therefore, there is no restriction on the length of papers. Scope: -whole proteome analysis of any organism -disease/pharmaceutical studies -comparative proteomics -protein-ligand/protein interactions -structure/functional proteomics -gene expression -methodology -bioinformatics -applications of proteomics
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