Noncovalent dyads of lanthanide nitride cluster fullerenes Ln3N@C80 and bisphthalocyanines LnPc2: Insights from DFT calculations.

IF 2.5 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Lina M Bolivar-Pineda, Elena V Basiuk, Vladimir A Basiuk
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引用次数: 0

Abstract

Context: Lanthanide-based systems, such as nitride cluster fullerenes Ln3N@C80 and bipthalocyanines LnPc2 (Pc = phthalocyanine ligand), are of interest for their magnetic, fluorescent and electronic properties. In this regard, we performed DFT characterization to investigate the changes in structure and electronic properties for noncovalently interacting lanthanide (Ln; where Ln = La, Ce, Gd and Lu) nitride cluster fullerenes and bisphthalocyanines to form Ln3N@C80 + LnPc2 dyads. The optimized geometries, formation and frontier orbital energies, HOMO-LUMO plots, charge and spin of Ln and N(NCF) atoms, as well as spin density plots of the dyads were analyzed in comparison with those of isolated Ln3N@C80 and LnPc2 components. In addition to LnPc2 bending distortion, the noncovalent dyad formation alters the geometry of the encapsulated Ln3N cluster, favoring more planar or pyramidal geometries, depending on the case. The HOMO and LUMO orbitals are found on bisphthalocyanines, being localized on the isoindole units, except for Ce3N@C80 + CePc2 dyad, where the LUMO was found on the central metal of CePc2. The HOMO-LUMO gap energy is lower for the dyads compared to isolated NCFs, being rather close to the gap energy of bisphthalocyanines. The changes in spin density distribution are evident in the dyads containing Ce and Gd atoms, contrary to their La and Lu-derived counterparts. The interaction of Ce3N@C80 and Gd3N@C80 with CePc2 and GdPc2, respectively, causes redistribution of the spin density, with changes in the orientation of spin-up and spin-down electrons in the encapsulated Ce3N and Gd3N clusters.

Methods: The geometry optimization and electronic properties calculations based on density functional theory were performed using the DMol3 module of Material Studio 8.0 software package from Accelrys Inc. The computational parameters selected included the general gradient approximation functional PBE, combined with a long-range dispersion correction developed by Grimme (PBE-D2), the double numerical basis set (DN), equivalent to the 6-31G Pople-type basis set along with the DFT semiconductor pseudopotentials. To mitigate the self-consistent field convergence problems, the thermal smearing technique was applied, with a final very small value of 0.0001 Ha (equivalent to 31.6 K temperature), or Fermi orbital occupancy in some cases.

氮化镧簇富勒烯Ln3N@C80和双酞菁LnPc2的非共价二联体:来自DFT计算的见解。
背景:基于镧系元素的体系,如氮化簇富勒烯Ln3N@C80和酞菁LnPc2 (Pc =酞菁配体),因其磁性、荧光和电子性质而引起人们的兴趣。在这方面,我们进行了DFT表征来研究非共价相互作用的镧系元素(Ln;其中Ln = La, Ce, Gd和Lu)氮化富勒烯和双酞菁形成Ln3N@C80 + LnPc2二偶体。与孤立的Ln3N@C80和LnPc2组分比较,分析了优化后的Ln和N(NCF)原子的几何形状、形成和前沿轨道能、HOMO-LUMO图、电荷和自旋以及二偶体的自旋密度图。除了LnPc2弯曲畸变外,非共价二元结构改变了封装Ln3N簇的几何形状,根据具体情况更倾向于平面或锥体几何形状。HOMO和LUMO轨道位于双酞菁上,定位在异吲哚基上,除了Ce3N@C80 + CePc2二元结构,LUMO位于CePc2的中心金属上。与分离的nfc相比,二偶体的HOMO-LUMO间隙能较低,与双酞菁的间隙能相当接近。在含有Ce和Gd原子的二元体中,自旋密度分布的变化是明显的,与La和lu衍生的二元体相反。Ce3N@C80和Gd3N@C80分别与CePc2和GdPc2的相互作用引起自旋密度的重新分布,使封装的Ce3N和Gd3N簇中的自旋向上和自旋向下的电子取向发生变化。方法:利用Accelrys公司的Material Studio 8.0软件包中的DMol3模块进行几何优化和基于密度函数理论的电子性能计算。选择的计算参数包括一般梯度近似泛函PBE,结合由Grimme开发的远程色散校正(PBE- d2),双数值基集(DN),相当于6-31G的person型基集以及DFT半导体伪势。为了缓解自一致场收敛问题,应用了热涂抹技术,最终值非常小,为0.0001 Ha(相当于31.6 K温度),或在某些情况下的费米轨道占用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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