Theoretical investigation of a thiazole carboxamide derivative and its interactions with tribbles pseudokinase

IF 5.2 2区 化学 Q2 CHEMISTRY, PHYSICAL
R. Abhijith, Riya Datta
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引用次数: 0

Abstract

In this work, we present the computational investigations of a thiazole carboxamide derivative encompassing density functional theory, topological analyses and in-silico biological studies. Beginning with geometry optimization, DFT studies included frontier molecular orbital and theoretical electronic spectra analyses, polarizability and hyperpolarizability studies and thermodynamic studies via frequency calculations. All calculations were modelled in five solvents using IEFPCM solvation model. Detailed insights into the electronic structure of the molecule were obtained by topological analyses. Biological assessment included generation of drug-likeness and pharmacokinetic descriptors using online tools and molecular docking. Docking of the molecule in Tribbles pseudokinase targets 5CEK and 5CEM revealed a binding energy of −6.93 kcal/mol and  −6.46 kcal/mol respectively with a corresponding inhibition constant of 8.26 and 18.50 μM.

Abstract Image

噻唑类羧酰胺衍生物及其与tribbles伪激酶相互作用的理论研究
在这项工作中,我们提出了一种包含密度泛函理论、拓扑分析和硅生物学研究的噻唑类羧基酰胺衍生物的计算研究。从几何优化开始,DFT研究包括前沿分子轨道和理论电子谱分析、极化性和超极化性研究以及通过频率计算进行的热力学研究。所有计算均采用IEFPCM溶剂化模型在五种溶剂中进行建模。通过拓扑分析获得了分子电子结构的详细信息。生物学评估包括使用在线工具和分子对接生成药物相似性和药代动力学描述符。该分子在Tribbles伪激酶靶点5CEK和5CEM上的对接显示,结合能分别为- 6.93 kcal/mol和- 6.46 kcal/mol,相应的抑制常数为8.26和18.50 μM。
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来源期刊
Journal of Molecular Liquids
Journal of Molecular Liquids 化学-物理:原子、分子和化学物理
CiteScore
10.30
自引率
16.70%
发文量
2597
审稿时长
78 days
期刊介绍: The journal includes papers in the following areas: – Simple organic liquids and mixtures – Ionic liquids – Surfactant solutions (including micelles and vesicles) and liquid interfaces – Colloidal solutions and nanoparticles – Thermotropic and lyotropic liquid crystals – Ferrofluids – Water, aqueous solutions and other hydrogen-bonded liquids – Lubricants, polymer solutions and melts – Molten metals and salts – Phase transitions and critical phenomena in liquids and confined fluids – Self assembly in complex liquids.– Biomolecules in solution The emphasis is on the molecular (or microscopic) understanding of particular liquids or liquid systems, especially concerning structure, dynamics and intermolecular forces. The experimental techniques used may include: – Conventional spectroscopy (mid-IR and far-IR, Raman, NMR, etc.) – Non-linear optics and time resolved spectroscopy (psec, fsec, asec, ISRS, etc.) – Light scattering (Rayleigh, Brillouin, PCS, etc.) – Dielectric relaxation – X-ray and neutron scattering and diffraction. Experimental studies, computer simulations (MD or MC) and analytical theory will be considered for publication; papers just reporting experimental results that do not contribute to the understanding of the fundamentals of molecular and ionic liquids will not be accepted. Only papers of a non-routine nature and advancing the field will be considered for publication.
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