Pretraining-based Relevance-aware Visit Similarity Network for Drug Recommendation.

IF 6.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS
Yichen He, Shoubin Dong, Yuchen Lin, Xiaorou Zheng, Jinlong Hu
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引用次数: 0

Abstract

Drug recommendation based on electronic health records (EHR) relies heavily on precise patient modeling, which is more complex than conventional recommendation tasks as it requires both temporal modeling of disease progression and referencing similar patients' medication information. However, sparse visit records and vague patient similarity in EHR data pose significant challenges, often introducing noise and ambiguity. To address the above challenges, we propose RaVSNet (Relevance aware Visit Similarity Network), which improves drug recommendation by leveraging both longitudinal and transversal visit similarity and integrating medical relevance knowledge. RaVSNet utilizes multi-dimensional visit information similar to the patient's current visit as a reference, and employs a relevance-aware network to explicitly model the matching relationships between medical conditions and medications. Additionally, RaVSNet designs a general pretraining framework specifically for drug recommendation, including two tasks, Medication Sequence Reconstruction (MSR) and Causal Effect Inference (CEI), to discover the deep connections between medical information and medications. Experimental results on two public EHR datasets, MIMIC-III and MIMIC-IV demonstrate that the proposed algorithm outperforms state-of-the-art methods, yielding more accurate drug recommendation combinations, and the proposed general pretraining framework can be seamlessly integrated into most drug recommendation methods to achieve performance improvements. The implementation is available at: https://github.com/SCUT-CCNL/RaVSNet.

基于预训练的药物推荐关联感知访问相似度网络。
基于电子健康记录(EHR)的药物推荐在很大程度上依赖于精确的患者建模,这比传统的推荐任务更复杂,因为它既需要对疾病进展进行时间建模,又需要参考类似患者的药物信息。然而,稀疏的就诊记录和模糊的患者相似度给电子病历数据带来了重大挑战,经常引入噪声和模糊性。为了解决上述挑战,我们提出了RaVSNet(关联感知访问相似性网络),该网络通过利用纵向和横向访问相似性并整合医学相关知识来改进药物推荐。RaVSNet利用类似于患者当前就诊的多维就诊信息作为参考,并采用关联感知网络明确建模医疗条件与药物之间的匹配关系。此外,RaVSNet还设计了一个针对药物推荐的通用预训练框架,包括药物序列重构(MSR)和因果效应推断(CEI)两个任务,以发现医疗信息与药物之间的深层联系。在两个公共EHR数据集MIMIC-III和MIMIC-IV上的实验结果表明,所提出的算法优于目前最先进的方法,产生更准确的药物推荐组合,并且所提出的通用预训练框架可以无缝集成到大多数药物推荐方法中以实现性能改进。实现可在:https://github.com/SCUT-CCNL/RaVSNet。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
IEEE Journal of Biomedical and Health Informatics
IEEE Journal of Biomedical and Health Informatics COMPUTER SCIENCE, INFORMATION SYSTEMS-COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
CiteScore
13.60
自引率
6.50%
发文量
1151
期刊介绍: IEEE Journal of Biomedical and Health Informatics publishes original papers presenting recent advances where information and communication technologies intersect with health, healthcare, life sciences, and biomedicine. Topics include acquisition, transmission, storage, retrieval, management, and analysis of biomedical and health information. The journal covers applications of information technologies in healthcare, patient monitoring, preventive care, early disease diagnosis, therapy discovery, and personalized treatment protocols. It explores electronic medical and health records, clinical information systems, decision support systems, medical and biological imaging informatics, wearable systems, body area/sensor networks, and more. Integration-related topics like interoperability, evidence-based medicine, and secure patient data are also addressed.
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