{"title":"Identifying the risk of Kawasaki disease based solely on routine blood test features through novel construction of machine learning models.","authors":"Tzu-Hsien Yang, Ying-Hsien Huang, Yuan-Han Lee, Jie-Nan Lai, Kuang-Den Chen, Mindy Ming-Huey Guo, Yan Pan, Chun-Yu Chen, Wei-Sheng Wu, Ho-Chang Kuo","doi":"10.1016/j.csbj.2025.06.037","DOIUrl":null,"url":null,"abstract":"<p><p>Kawasaki disease (KD) is a leading cause of acquired coronary vasculitis in children and remains a critical diagnostic challenge among febrile pediatric patients. To support frontline pediatricians with a more objective diagnostic tool, we developed and implemented KDpredictor, a machine learning-based model for KD risk identification. KDpredictor leverages only the routine blood test features, including complete blood count with differential count, C-reactive protein, and alanine aminotransferase. It also takes the lead in using age-calibrated eosinophil, platelet, and hemoglobin results. Trained using the light gradient boosting machine algorithm on clinical data from 1,927 KD cases and 45,274 febrile controls, KDpredictor achieved strong performance metrics (auROC: 95.7%, auPRC: 72.4%, recall: 0.89) on a reserved test set, outperforming previous models by at least 3% in auROC and 39.3% in auPRC. Additional explainable AI analyses revealed that several top predictive features in KDpredictor are consistent with prior clinical findings. We also evaluated KDpredictor on three independent cohorts collected in East Asia (Taiwan and China) during the COVID-19 period. KDpredictor achieves recall values of 90.9%, 83.7%, and 91.7% on KD samples identified in three independent medical centers, respectively, indicating its applicability across independent clinical settings. In summary, KDpredictor demonstrates robust generalizability in KD risk identification across populations by using only standard blood samples independent of clinical symptoms. KDpredictor is freely available at https://cosbi.ee.ncku.edu.tw/KD_under7/.</p>","PeriodicalId":10715,"journal":{"name":"Computational and structural biotechnology journal","volume":"27 ","pages":"2832-2842"},"PeriodicalIF":4.4000,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12268775/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational and structural biotechnology journal","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1016/j.csbj.2025.06.037","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Kawasaki disease (KD) is a leading cause of acquired coronary vasculitis in children and remains a critical diagnostic challenge among febrile pediatric patients. To support frontline pediatricians with a more objective diagnostic tool, we developed and implemented KDpredictor, a machine learning-based model for KD risk identification. KDpredictor leverages only the routine blood test features, including complete blood count with differential count, C-reactive protein, and alanine aminotransferase. It also takes the lead in using age-calibrated eosinophil, platelet, and hemoglobin results. Trained using the light gradient boosting machine algorithm on clinical data from 1,927 KD cases and 45,274 febrile controls, KDpredictor achieved strong performance metrics (auROC: 95.7%, auPRC: 72.4%, recall: 0.89) on a reserved test set, outperforming previous models by at least 3% in auROC and 39.3% in auPRC. Additional explainable AI analyses revealed that several top predictive features in KDpredictor are consistent with prior clinical findings. We also evaluated KDpredictor on three independent cohorts collected in East Asia (Taiwan and China) during the COVID-19 period. KDpredictor achieves recall values of 90.9%, 83.7%, and 91.7% on KD samples identified in three independent medical centers, respectively, indicating its applicability across independent clinical settings. In summary, KDpredictor demonstrates robust generalizability in KD risk identification across populations by using only standard blood samples independent of clinical symptoms. KDpredictor is freely available at https://cosbi.ee.ncku.edu.tw/KD_under7/.
期刊介绍:
Computational and Structural Biotechnology Journal (CSBJ) is an online gold open access journal publishing research articles and reviews after full peer review. All articles are published, without barriers to access, immediately upon acceptance. The journal places a strong emphasis on functional and mechanistic understanding of how molecular components in a biological process work together through the application of computational methods. Structural data may provide such insights, but they are not a pre-requisite for publication in the journal. Specific areas of interest include, but are not limited to:
Structure and function of proteins, nucleic acids and other macromolecules
Structure and function of multi-component complexes
Protein folding, processing and degradation
Enzymology
Computational and structural studies of plant systems
Microbial Informatics
Genomics
Proteomics
Metabolomics
Algorithms and Hypothesis in Bioinformatics
Mathematical and Theoretical Biology
Computational Chemistry and Drug Discovery
Microscopy and Molecular Imaging
Nanotechnology
Systems and Synthetic Biology